Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29l10
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0175 + 21350528-21351136 29 2.0
10_01_0334 - 3680612-3681266,3682253-3682374 29 2.7
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 28 6.2
05_05_0297 - 23921648-23921758,23922011-23922089,23922774-239228... 28 6.2
04_04_0364 + 24726020-24726255,24726330-24726467,24727191-247276... 28 6.2
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240... 27 8.2
07_03_1079 - 23798005-23798760 27 8.2
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 27 8.2
04_01_0075 - 838358-838945,847120-847282,847581-847687 27 8.2
>09_06_0175 + 21350528-21351136
Length = 202
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -2
Query: 400 GCLGRVSQRQCERTQRGARLPQ*HPCGAQRGHRTPARALRQRRPHRALRHFAHAPSHQRP 221
G +G R+C R +RGAR P P Q+ R RA+ + R R + RP
Sbjct: 41 GGVGARGARRCVRPRRGARPP---PLHHQQPPRRRRRAVEESRGGGGARRVRSPRTPSRP 97
Query: 220 P 218
P
Sbjct: 98 P 98
>10_01_0334 - 3680612-3681266,3682253-3682374
Length = 258
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -2
Query: 451 TSTGRDVHEPQGLEQSRGCLGRVSQRQCERTQRGA 347
T GR P+G RGC R R+ R RGA
Sbjct: 138 TLAGRSWRSPRGAGSGRGCYRRGGSREGRRGARGA 172
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 497 LKTKLKCASASVSVKNKHRARRARASGPG 411
L LKC +A + V+ + R RRAR S G
Sbjct: 120 LAVTLKCMNALLRVQERARERRARCSADG 148
>05_05_0297 -
23921648-23921758,23922011-23922089,23922774-23922822,
23923180-23923255,23923693-23923767,23923862-23923992,
23924830-23924935
Length = 208
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 388 RVSQRQCERTQRGARLPQ*HPCGAQRGHRTPARALRQRRPHR 263
R S+ + ++ + R P+ P AQR TP + +QR+PHR
Sbjct: 10 RKSKAEPKKKLQFERSPR--PSKAQRAGGTPRQQTKQRKPHR 49
>04_04_0364 +
24726020-24726255,24726330-24726467,24727191-24727657,
24727753-24728300
Length = 462
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 255 ATSRTHPPTRDHHTSNVHLKLHFLSVPR 172
A SRTHPP DH + N L+ S R
Sbjct: 57 AASRTHPPCTDHTSCNKQQLLYISSEVR 84
>09_06_0244 + 21822811-21823246,21823337-21823468,21823949-21824037,
21824135-21824224,21825033-21825603,21826097-21826734,
21826978-21827098,21827223-21827337,21828234-21829723,
21829830-21829901,21830151-21830196,21830413-21830515,
21830591-21830674,21831035-21831475,21831651-21831746,
21831896-21832045,21832131-21832274,21832414-21832527,
21832621-21832803,21832901-21832945,21833058-21833192
Length = 1764
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = -3
Query: 294 PAHSASAGRTAPSATSRTHPPTR-DHHTSNVHLKLHFLSV 178
P H A S T R HPPT + H +H L+V
Sbjct: 1018 PQHKAGPFSRRVSKTKRKHPPTHLNKHVKRLHSNCKVLNV 1057
>07_03_1079 - 23798005-23798760
Length = 251
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = -3
Query: 288 HSASAG---RTAPSATSRTHPPT--RDHHTSNVHLKLHFLSVPR*SLRLGV 151
HS AG + A S + PP+ HH + L+ H + P SL +GV
Sbjct: 151 HSLGAGFARQVARMLASSSSPPSPRHHHHAAAASLEFHLFNAPYLSLPMGV 201
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -3
Query: 300 HPPA---HSASAGRTAPSATSRTHPPTRDHHTSNVH 202
HPP + GR APS + + H +R HH H
Sbjct: 138 HPPHAGYNCGGGGRRAPSPSPQMHAASRRHHHGRHH 173
>04_01_0075 - 838358-838945,847120-847282,847581-847687
Length = 285
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 282 ASAGRTAPSATSRTHPPTRDHHTSNVHLKLHF 187
A+A AP+ HPP +H ++V L H+
Sbjct: 15 AAAALAAPAMADYAHPPLDPNHVTSVELLDHY 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,222
Number of Sequences: 37544
Number of extensions: 217727
Number of successful extensions: 800
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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