Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29l09
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    30   0.37 
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    28   1.1  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   3.5  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   8.0  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    25   8.0  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    25   8.0  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +2

Query: 383 SPFNKFANTSSNPRKNTVINSPY 451
           SP + + + S++PRK+TVI+SP+
Sbjct: 129 SPTSSYGSGSASPRKSTVISSPF 151


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
            Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 417  FDDVFANLLKGERIRLSPPSSKELLIPVEVGVVFSKLF 304
            F ++F  LL G    L PP +KE    +E+ V    ++
Sbjct: 1042 FGEIFDELLPGNSAELQPPENKEFTDGLEIHVKIGSIW 1079


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 455 CIGLSSKEKSYIISNCQ 505
           CIGL++K  SY++ NC+
Sbjct: 391 CIGLTAKSVSYLMYNCK 407


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 191 FCVYLFIVFY*RDFLNCNHMFKAVSKTLEP-CTGIILILF 75
           + ++LF  FY  D++ C  + +A  + +   C  II++L+
Sbjct: 559 YVLFLFACFYGLDYILCAELLQAFLRVVFTFCEHIIILLY 598


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +2

Query: 293 CTTSNN--FEKTTPTSTGIKSSLDEGGLKRILSPFNKFANTSSNPRKNTVINSPYRCIGL 466
           C+ S +   E    TST +    +   +    S F+ F   +++    T++N P+R +G 
Sbjct: 439 CSESQSVVIESLRGTSTQLLDERNGSIISLSNSKFHPFVACAASDGIVTIVN-PFRLLGF 497

Query: 467 SSKEKSYI 490
           S K+K+ +
Sbjct: 498 SHKQKANV 505


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 117 KNFGTMHWNHFNFILFYCFCYVSSSLIVIFFMYQ 16
           KN+G + W  F F  F C    + +LI + + Y+
Sbjct: 103 KNYGAVEWTLFGFWCFVC----TLALIFLTYFYE 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,683
Number of Sequences: 5004
Number of extensions: 54583
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)