Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29l09
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213...    29   2.7  
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606...    29   4.8  

>02_01_0317 -
           2128660-2128776,2129281-2129364,2129463-2129543,
           2130230-2130407,2130530-2130673,2130780-2130826,
           2131149-2131205,2131989-2132087,2132301-2132423,
           2132514-2132636,2132859-2132972,2133612-2133800,
           2134408-2134574,2134707-2134791,2134891-2135085,
           2135162-2135251,2135418-2135603,2135885-2135959,
           2136757-2136957
          Length = 784

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 535 KYCIKRYSESQNIFYLWPMQYYQKIIIA 618
           K C+  YSE +NIF +W +  Y++ ++A
Sbjct: 754 KNCMISYSEYRNIFPIWALGEYRRRVLA 781


>01_06_1713 - 39359558-39359590,39360000-39360074,39360437-39360662,
            39360792-39360880,39360960-39361053,39361134-39361318,
            39361415-39361582,39361682-39361822,39362327-39362545,
            39362628-39362744,39363154-39363248,39363662-39363743,
            39363864-39363926,39364157-39364216,39364312-39364476,
            39364574-39364759,39364890-39365180,39365262-39365405,
            39365492-39366172,39367045-39367362
          Length = 1143

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 423  RGFDDVFANLLKGERIRLSPPSSKELLIPVEVGVVFSKLF 304
            + F  +F+ LL G   +L PP     L  +EV V F  ++
Sbjct: 1033 KDFGSIFSTLLPGTMAKLDPPEGGTFLDGLEVRVAFGTVW 1072


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,474,368
Number of Sequences: 37544
Number of extensions: 270525
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)