Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29l09
         (707 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL022327-3|CAI42686.1|  747|Homo sapiens protein ( Human DNA seq...    42   0.002
AK023960-1|BAB14741.1|  744|Homo sapiens protein ( Homo sapiens ...    35   0.25 

>AL022327-3|CAI42686.1|  747|Homo sapiens protein ( Human DNA
           sequence from clone RP3-355C18 on chromosome 22q13.3
           Contains a novel gene, a novel gene, the MLC1 gene for
           megalencephalic leukoencnovel protein (FLJ41993)).
          Length = 747

 Score = 42.3 bits (95), Expect = 0.002
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +2

Query: 506 ARSTRYSKLKNIALNAIQNRKIFSIYGPCNTIRKLLLQRGWVEK 637
           +R  RY   + +   AI+ +KIFSIYG    +R  L ++GWVEK
Sbjct: 11  SRLDRYKIARQLTEKAIKEKKIFSIYGHYPVVRAALRRKGWVEK 54


>AK023960-1|BAB14741.1|  744|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13898 fis, clone THYRO1001738, weakly similar to
           TUBULIN--TYROSINE LIGASE (EC 6.3.2.25). ).
          Length = 744

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +2

Query: 551 AIQNRKIFSIYGPCNTIRKLLLQRGWVEK 637
           A++ +KIF+I G    IR LL +RGWVEK
Sbjct: 14  AVKQKKIFTIQGCYPVIRCLLRRRGWVEK 42


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,169,504
Number of Sequences: 237096
Number of extensions: 1649963
Number of successful extensions: 2404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2404
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)