SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29l07
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...   107   2e-24
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...   101   9e-23
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...   100   2e-22
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo...    89   4e-19
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||...    46   4e-06
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr...    40   2e-04
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||...    40   2e-04
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    39   6e-04
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||...    37   0.003
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch...    36   0.005
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||...    34   0.016
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch...    33   0.028
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    33   0.037
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    33   0.049
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    29   0.46 
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    29   0.80 
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    28   1.1  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.2  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   5.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.4  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   9.8  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   9.8  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   9.8  

>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score =  107 bits (256), Expect = 2e-24
 Identities = 50/130 (38%), Positives = 81/130 (62%)
 Frame = +3

Query: 84  RQIVLILIGLDNAGKTKTVNNLVGDKDDKVLPTIGFKAVNLVHKDTPVTIYDLGGGPNFR 263
           R++ ++L+GLDNAGKT  +  L+ +  ++V PT GF+   L  +    TI+D+GG    R
Sbjct: 15  REVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLR 74

Query: 264 QIWPQYYSEVHGVIFVIDSSDCSRLDECRSVLEDVLSHDRISGKPVLVLANKQDKTGALD 443
             W  Y+     +I+V+DS D  RL+ECR+ L+++L  +++    +LVLANK D +GAL 
Sbjct: 75  NFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALS 134

Query: 444 DIDVVEKLNI 473
             ++ + LNI
Sbjct: 135 SEEISKILNI 144


>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score =  101 bits (242), Expect = 9e-23
 Identities = 47/144 (32%), Positives = 83/144 (57%)
 Frame = +3

Query: 60  LFRRSGVRRQIVLILIGLDNAGKTKTVNNLVGDKDDKVLPTIGFKAVNLVHKDTPVTIYD 239
           LF+    +R++ ++++GLD AGKT  +  L   +    +PTIGF    + +++   T++D
Sbjct: 8   LFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWD 67

Query: 240 LGGGPNFRQIWPQYYSEVHGVIFVIDSSDCSRLDECRSVLEDVLSHDRISGKPVLVLANK 419
           +GG    R +W  Y+    G+IFV+DS+D  R+ E    L+ +L+ D +    +LV ANK
Sbjct: 68  VGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANK 127

Query: 420 QDKTGALDDIDVVEKLNIEPLVNR 491
           QD   A++  ++ +KL +  L +R
Sbjct: 128 QDLPNAMNAAEITDKLGLHSLRHR 151


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score =  100 bits (239), Expect = 2e-22
 Identities = 47/143 (32%), Positives = 82/143 (57%)
 Frame = +3

Query: 63  FRRSGVRRQIVLILIGLDNAGKTKTVNNLVGDKDDKVLPTIGFKAVNLVHKDTPVTIYDL 242
           F R    +++ ++++GLD AGKT  +  L  ++    +PT+GF    + +K+    ++D+
Sbjct: 13  FSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDV 72

Query: 243 GGGPNFRQIWPQYYSEVHGVIFVIDSSDCSRLDECRSVLEDVLSHDRISGKPVLVLANKQ 422
           GG    R +W  Y++   G+IFV+DS+D +R+ E R  L  ++S   +    +LVLANKQ
Sbjct: 73  GGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQ 132

Query: 423 DKTGALDDIDVVEKLNIEPLVNR 491
           D  GAL    + + L ++ L +R
Sbjct: 133 DLPGALSPAQITDVLQLDKLKDR 155


>SPBC31F10.06c |sar1||ADP-ribosylation factor
           Sar1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 190

 Score = 89.4 bits (212), Expect = 4e-19
 Identities = 48/176 (27%), Positives = 90/176 (51%)
 Frame = +3

Query: 78  VRRQIVLILIGLDNAGKTKTVNNLVGDKDDKVLPTIGFKAVNLVHKDTPVTIYDLGGGPN 257
           V +   ++ +GLDNAGKT  ++ L  D+   + PT+   +  L   +   T +DLGG   
Sbjct: 17  VNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQ 76

Query: 258 FRQIWPQYYSEVHGVIFVIDSSDCSRLDECRSVLEDVLSHDRISGKPVLVLANKQDKTGA 437
            R++W  Y+ EV+G+++++D  D  RL E ++ L+ +L+ + ++  P L+L NK D  GA
Sbjct: 77  ARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGA 136

Query: 438 LDDIDVVEKLNIEPLVNRYRCPTLVESYTANIDTKSKKLKIDPGLRKGYHWLLNYI 605
           + + ++   L +     +     +       +   S  L+   G  +G+ WL  Y+
Sbjct: 137 ISEDELKAALGLYQTTGKGVSKPVPGIRPIEVFMCSVVLR--QGYGEGFKWLAQYV 190


>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
 Frame = +3

Query: 96  LILIGLDNAGKTKTVNNLVGDK-DDKVLPTIG----FKAVNLVHKDTPVTIYDLGGGPNF 260
           L+LIG    GK+  +     D   +  + TIG     +   L  K   + I+D  G   F
Sbjct: 11  LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERF 70

Query: 261 RQIWPQYYSEVHGVIFVIDSSDCSRLDECRSVLEDVLSHDRISGKPVLVLANKQD 425
           R I   YY   HG+I V D +D    +  +  L+++     + G   L++ NK D
Sbjct: 71  RTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEI-DRYAVEGVNRLLVGNKSD 124


>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
 Frame = +3

Query: 84  RQIVLILIGLDNAGKTKTVNNLVGDK-DDKVLPTIGF----KAVNLVHKDTPVTIYDLGG 248
           R+  L+ +G  + GKT  +   + D+ D+    TIG     K + L  +   + ++D  G
Sbjct: 10  RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 69

Query: 249 GPNFRQIWPQYYSEVHGVIFVIDSSDCSRLDECRSVLEDVLSHDRISGKPVLVLANKQD 425
              FR + P Y  +    I V D ++ +        +EDV + +R     ++++ NK D
Sbjct: 70  QERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRA-ERGDDVIIVLVGNKTD 127


>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
 Frame = +3

Query: 96  LILIGLDNAGKTKTVNNLVGDK-DDKVLPTIG--FKAVNL-VHKDTPVT--IYDLGGGPN 257
           L+L+G    GK+  V   V D+ DD    TIG  F    L + ++T V   I+D  G   
Sbjct: 17  LVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQER 76

Query: 258 FRQIWPQYYSEVHGVIFVIDSSDCSRLDECRSVLEDVLSHDRISGKPVLVLANKQD 425
           ++ + P YY   +  I V D +  + L++ +S +++ L      G  + +  NK D
Sbjct: 77  YKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKE-LQRQAPEGIVIALAGNKLD 131


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
 Frame = +3

Query: 90  IVLILIGLDNAGKTKTVNNLVGDK-DDKVLPTIGF----KAVNLVHKDTPVTIYDLGGGP 254
           I L+LIG    GK+  +     D      + TIG     + + L  K   + I+D  G  
Sbjct: 10  IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69

Query: 255 NFRQIWPQYYSEVHGVIFVIDSSDCSRLDECRSVLEDVLSHDRISGKPVLVLANKQD 425
            FR I   YY    G++ + D +D    D  R+   +V  H   +   +L+  NK D
Sbjct: 70  RFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILI-GNKCD 125


>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
 Frame = +3

Query: 90  IVLILIGLDNAGKTKTVNNLVGDK-DDKVLPTIGFKAVNLV--------HKDTPVTIYDL 242
           + ++L G    GK+  +   V ++ DD+V  T+G    + +         K   + I+D 
Sbjct: 10  VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69

Query: 243 GGGPNFRQIWPQYYSEVHGVIFVIDSSDCSRLDECRSVLEDV 368
            G   FR +   YY    G + V D ++    +E  S L D+
Sbjct: 70  AGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDI 111


>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 198

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
 Frame = +3

Query: 102 LIGLDNAGKTKTVNNLV-GDKDDKVLPTIGF----KAVNLVHKDTPVTIYDLGGGPNFRQ 266
           +IG  + GKT  +   V G  D++   T+G     K +++ + +   +I+DLGG   F  
Sbjct: 15  MIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVN 74

Query: 267 IWPQYYSEVHGVIFVIDSSDCSRLDECRSVLEDVLSHDRISGKPVLV 407
           + P   ++   ++F+ D S  S L+  +         ++ +  P+L+
Sbjct: 75  MLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNK-TAVPILI 120


>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 214

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
 Frame = +3

Query: 99  ILIGLDNAGKTKTVNNLVGDKDD-KVLPTIG--FKAVNLV--HKDTPVTIYDLGGGPNFR 263
           +LIG    GK+  +     ++ + +   TIG  F   N+V  +K     I+D  G   +R
Sbjct: 14  VLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYR 73

Query: 264 QIWPQYYSEVHGVIFVIDSSDCSRLDECRSVLEDVLSHDRISGKPVLVLANKQD 425
            I   YY    G + V D +  S  D     L+++  H   S   ++++ NK D
Sbjct: 74  AITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREH-ADSNIVIMLVGNKTD 126


>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 33.5 bits (73), Expect = 0.028
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 4/148 (2%)
 Frame = +3

Query: 69  RSGVRRQIVLILIGLDNAGKTKTVNNLVG----DKDDKVLPTIGFKAVNLVHKDTPVTIY 236
           RS   R+  L+++G    GK+     L+     D+ D  +     K   +  +   + + 
Sbjct: 2   RSTYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVL 61

Query: 237 DLGGGPNFRQIWPQYYSEVHGVIFVIDSSDCSRLDECRSVLEDVLSHDRISGKPVLVLAN 416
           D  G   +  +  QY     G + V + +  S  DE  +  + +L        PV+++AN
Sbjct: 62  DTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVAN 121

Query: 417 KQDKTGALDDIDVVEKLNIEPLVNRYRC 500
           K D    L+   VV +   E L     C
Sbjct: 122 KCD----LEAERVVSRAEGEQLAKSMHC 145


>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 185

 Score = 33.1 bits (72), Expect = 0.037
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
 Frame = +3

Query: 96  LILIGLDNAGKTK-TVNNLVGDKDDKVLPTIG---FKAVNLVHKDTPVTIYDLGGGPNFR 263
           + ++G  + GK+  TV  +     +   PTI     K +    ++    I D  G   + 
Sbjct: 9   IAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEYS 68

Query: 264 QIWPQYYSEVHGVIFVIDSSDCSRLDECRSVLEDVLSHDRISGKPVLVLANKQD 425
            +  ++   +HG + V   +  S  +  + V + +L+H      P++V+ NK D
Sbjct: 69  ILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSD 122


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 32.7 bits (71), Expect = 0.049
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +3

Query: 102 LIGLDNAGKTKTVNNLVGDKDDKVLPTIG----FKAVNLVHK 215
           L+G  N GK+ T+N LVG K   V  T G    F+ +NL  K
Sbjct: 306 LVGYPNVGKSSTINALVGSKKVSVSSTPGKTKHFQTINLSEK 347


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +3

Query: 180 TIGFKAVNLVHKDTPVTIYDLGGGPNFRQIWPQYYSEVHGVIFVIDSSD 326
           T+G   ++       + ++D+GG    R+ W   +  V+ +IF +  +D
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLND 227


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 189 NRLWVKLCHLYRPLSYSQFSFCPRCLSLL 103
           N ++   CHLYRP   S    C  C+  L
Sbjct: 180 NTVYCHTCHLYRPPRASHCHLCDNCVEYL 208


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 81  RRQIVLILIGLDNAGKTKTVNNLVGDKDDKVLPTIG 188
           ++QI + LIG  NAGK+  +N L   K   V P  G
Sbjct: 308 KKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPG 343


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 444 RLGRRSCPVCW 412
           + G RSCP+CW
Sbjct: 263 KCGHRSCPICW 273


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 459 LQRRCRLGRRSCPVCWPIQAQVYQIFCRATKH 364
           LQ   +L +   P  W +  ++Y++FC  TK+
Sbjct: 275 LQTYDQLHKPIFPPHWKVDFRLYEVFCEETKN 306


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 72  SGVRRQIVLILIGLDNAGKTKTVNNLVGDKDDKV 173
           +GV+    L+L+G    GKT T+  L G    KV
Sbjct: 462 AGVQTNEPLLLVGETGTGKTTTIQLLAGLLGQKV 495


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 174 LPTIGFKAVNLVHKDTPVTIYDLGGGPNFRQIWPQYYSEVH 296
           L +I   A+N   +  P+ +      PNF Q  PQY ++V+
Sbjct: 425 LQSISNNALNENIEQPPIKMAARHSYPNFLQTLPQYMNDVY 465


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 399 VLVLANKQDKTGALDDIDVVEKLNIEPL 482
           +L +     +TG L D+DV+E +++ PL
Sbjct: 342 ILCVGASVTRTGLLLDMDVMEHISLHPL 369


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 501 PTLVESYTANIDTKSKKLKIDPGLRKGYHWLLN 599
           P     YT+ +  KSK+  IDP L +G  W ++
Sbjct: 368 PPAFSEYTSELQKKSKQELIDPTL-EGPRWTVS 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,148
Number of Sequences: 5004
Number of extensions: 55047
Number of successful extensions: 188
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -