Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29l05
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1063 + 10974522-10974776,10975094-10975599,10976243-109763...    31   0.91 
01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327...    29   4.9  
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730...    28   8.5  
01_05_0659 - 24061318-24061575,24061664-24061918,24062001-240621...    28   8.5  

>12_01_1063 +
           10974522-10974776,10975094-10975599,10976243-10976321,
           10976337-10976633,10976712-10976976,10977055-10977425
          Length = 590

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 575 ICDCTSMRHTAVFKDCPHCEIYFVHVK 655
           IC+C    HT +F  CPH    FVHV+
Sbjct: 458 ICECMQWEHTGLF--CPHLLRAFVHVQ 482


>01_05_0712 -
           24531654-24531874,24532438-24532538,24532621-24532716,
           24532951-24533048,24533827-24533883,24534764-24534895,
           24535042-24535155,24535227-24535359,24535448-24535678,
           24535761-24535843,24536009-24536137,24536504-24536599,
           24536719-24536773,24537316-24537386,24537472-24537525,
           24537691-24537768,24537985-24538117,24539381-24539496,
           24539580-24539651,24540113-24540218,24540657-24540772,
           24541170-24541319,24541410-24541492,24541591-24541669,
           24542645-24542695
          Length = 884

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 76  LQSRSTLFYSIIN--SFRRARDVKNILGNFLHLELHYWNFSKDPYFFSS 216
           L     ++Y + +  S+ R  D+   L NFL +E HY + ++D + F S
Sbjct: 484 LHDMQCMWYELASGESYYRQGDLGRALKNFLAVEKHYADMTEDQFDFHS 532


>12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,
            7302885-7304042,7304133-7304291,7304397-7304504,
            7305045-7305304,7305936-7306101,7307025-7307050,
            7307318-7307402,7307486-7307695,7308815-7308872,
            7308964-7309037,7309323-7309373,7309576-7309664,
            7310027-7310104,7310164-7310269
          Length = 1140

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 517  THRYFI*MNAVVIVLFKFSYL*LYLHATH 603
            T+R+++ + A+ IVL    YL ++LH +H
Sbjct: 1053 TNRFYLALCALTIVLLPLFYLIVFLHQSH 1081


>01_05_0659 -
           24061318-24061575,24061664-24061918,24062001-24062172,
           24062258-24062381,24062442-24062485,24063601-24063734,
           24063822-24063905,24064100-24064390,24064713-24065045,
           24065145-24065389,24065644-24065910,24065997-24066157,
           24066253-24066569,24066665-24066946,24067024-24067325,
           24067398-24067488,24067796-24067849,24067963-24068039,
           24068159-24068318,24068653-24068737,24069029-24069238,
           24069344-24069732
          Length = 1444

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 59  VNINVFYKVVVHY-FILSSIVFVGHAM*RIF*VIFYTLSYIIGILVRIPIFFLQK 220
           + + VF++  +H   +   ++F+G     +  ++F  LS +   + ++P+FF Q+
Sbjct: 557 IAMTVFFRTKMHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQR 611


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,781,987
Number of Sequences: 37544
Number of extensions: 274247
Number of successful extensions: 564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)