Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29l05
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   0.94 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.8  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 637 LFRTCQTILPCFIYGNIKKIYVYVPS 714
           +F     ILPC +  ++  +  YVPS
Sbjct: 214 MFYVFNLILPCILINSVALLVFYVPS 239


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 586 YLHATHRRVQRLSTL*NLFRTCQTILPCFIYGNIKKIYVYVPS 714
           YL  T     R  TL   F T   I+PC     +  +  Y+PS
Sbjct: 227 YLDITFNITMRRKTL---FYTVNLIIPCMGISFLTVLVFYLPS 266


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 434 CNFFKILNLKWLSCKVTKMSFKPNSL 511
           CN  + +N K +S   + M   PN L
Sbjct: 455 CNLMRTMNRKQISELESNMQISPNEL 480


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 586 YLHATHRRVQRLSTL*NLFRTCQTILPCFIYGNIKKIYVYVPS 714
           YL  T     R  TL   F T   I+PC     +  +  Y+PS
Sbjct: 231 YLDITFNITMRRKTL---FYTVNIIIPCMGISFLTVLTFYLPS 270


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 586 YLHATHRRVQRLSTL*NLFRTCQTILPCFIYGNIKKIYVYVPS 714
           YL  T     R  TL   F T   I+PC     +  +  Y+PS
Sbjct: 231 YLDITFNITMRRKTL---FYTVNIIIPCMGISFLTVLTFYLPS 270


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 637 LFRTCQTILPCFIYGNIKKIYVYVPS 714
           LF T   I+PC     +  +  Y+PS
Sbjct: 237 LFYTVNLIIPCVGISFLSVLVFYLPS 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,849
Number of Sequences: 438
Number of extensions: 4279
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)