Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29l02
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 67 3e-12
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 30 0.28
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 29 0.85
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 28 1.1
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 27 2.0
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 27 2.0
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc... 26 4.5
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ... 26 6.0
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 26 6.0
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 25 7.9
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 25 7.9
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 7.9
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c... 25 7.9
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 66.9 bits (156), Expect = 3e-12
Identities = 36/113 (31%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Frame = +1
Query: 379 WNDFYRINDIYNWLKDLKDKYPEFVKVESIGTTYEKRPILAV-----HVTLPGSKLRSK- 540
+ + + I +WL+ + Y + ++ +G T E R IL + H + G K+R+K
Sbjct: 180 FKSYQNLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKLNGRHPSDNGEKIRNKK 239
Query: 541 -VIVEGGIHAREWIGPCFVTYMLQQILDSPKSNNSNLKDIALTYEWFFVPVLN 696
+I++GG HAREWIG V Y Q+L + ++ +++ + +EW F+PVLN
Sbjct: 240 VIIIQGGSHAREWIGIPSVCYAAWQLL-AKYDSDGHVRKLLDKFEWIFIPVLN 291
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 30.3 bits (65), Expect = 0.28
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +1
Query: 205 GSLYK-PIDFVLAPGDKKVFLKMAEEYDVYLS 297
GS+Y+ PID + +PG++ F ++ + VYLS
Sbjct: 87 GSVYQQPIDIIFSPGEEVFFERVGGDIPVYLS 118
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 28.7 bits (61), Expect = 0.85
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +1
Query: 208 SLY-KPIDFVLAPGDKKVFLKMAEEYDVYLSTLIADV--QRAFDMQRVKSYIRRNLGSF 375
S+Y K DF P V +A EY + +S ++ DV +RA +Q + N+G +
Sbjct: 366 SVYNKYFDFTNPPSRSCVAAPLASEYRIVMSCIVGDVTEKRALHVQGQSYWAPANIGPY 424
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 28.3 bits (60), Expect = 1.1
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Frame = +1
Query: 46 FYLISFLLFHPNYCATK--KYTNYTLYRG--VPVNKSHLDFFNSLSEMFDVN-FWTPPGS 210
F+L+S +F+P YC + NYTL +N HL++F + + + F
Sbjct: 462 FFLLSHEMFNPFYCLFEYSSVDNYTLQINPHSGINPEHLNYFKFIGRVIGLAIFHRRFVD 521
Query: 211 LYKPIDFVLAPGDKKVFLKMAEEYDV-YLSTLI 306
+ + F KKV L+ E D Y +L+
Sbjct: 522 AFFVVSFYKMILQKKVTLQDMESMDAEYYRSLV 554
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +1
Query: 46 FYLISFLLFHPNYCATK--KYTNYTLYRG--VPVNKSHLDFFNSLSEM 177
F+L+S +F P YC + NYTL +N HL++F + +
Sbjct: 481 FFLLSHKMFDPIYCLFEYSAVDNYTLQINPHSSINPEHLNYFRFIGRV 528
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 461 STFTNSGYLSFRSFNQL 411
S++TNSG SF+SFN L
Sbjct: 68 SSYTNSGQKSFKSFNSL 84
>SPCC16A11.07 |coq10||ubiquinone binding protein
Coq10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 164
Score = 26.2 bits (55), Expect = 4.5
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Frame = +1
Query: 10 RQNSLCPQKMS-LFYLIS----FLLFHPNYCATKKYTNYTLYRGVPVNKSHLDFFNSLSE 174
R + L P K S LF LIS + F P +C K T Y G P F L E
Sbjct: 14 RASRLMPYKPSFLFSLISNVNEYERFVP-FCQKSKVTEYDPKTGYPTKADLTVGFKGLCE 72
Query: 175 MFDVNFWTPPGSL 213
FD P +L
Sbjct: 73 TFDSKVVCDPVAL 85
>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 268
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 287 TSYSSAIFRKTFLSPGAKTKSIGLYKEPGGVQKLTS 180
+ Y+SA+ T L G++T +I + + +QKL S
Sbjct: 161 SGYASALHTLTQLDDGSETNAINVSTQKFAIQKLQS 196
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 175 MFDVNFWTPPGSLYKPIDFVLAPGDKKVFL 264
+FD N W PPG K DFV + FL
Sbjct: 359 LFDQNEWLPPGE--KQFDFVFDESQQIDFL 386
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +1
Query: 136 NKSHLDFFNSLSEMFDVNFWTPPGSLYKPI--DFVLAPG 246
NK DF S ++ + + FW P + I + APG
Sbjct: 147 NKEIFDFLQSAAKKYGIQFWGPGSGIIHQIVLENYAAPG 185
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 304 IADVQRAFDMQRVKSYIRRNLGSFDWNDFYRINDIY 411
IAD+ + + LGSFDW R D Y
Sbjct: 60 IADLVAKMKTAKQNGFPNSQLGSFDWGMIKRKRDAY 95
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 463 FLLSRIQDIYLLDPSTN 413
FLLS++Q + LDPST+
Sbjct: 91 FLLSKLQSLLSLDPSTD 107
>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -3
Query: 276 FCHFQENLFVSGSQNKIYRFVQRARRSPKINVKHLTQAVEEI*MTFID 133
FCHF + LF + S+ K++ ++ K+N A +I F++
Sbjct: 213 FCHFAQELFQNSSKVKVFVHDEKWIDEQKMNGLLTVNAGSDIPPRFLE 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,198
Number of Sequences: 5004
Number of extensions: 69082
Number of successful extensions: 210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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