Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29l02
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445...    29   4.7  
03_06_0376 + 33479776-33479958,33481055-33481236,33481345-334814...    28   6.2  
06_03_0251 + 18715023-18715106,18715274-18715396,18715509-187156...    28   8.2  
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885...    28   8.2  
04_04_1186 + 31567425-31567438,31568168-31568254,31568335-315684...    28   8.2  

>02_05_1312 +
           35642687-35642923,35643712-35643831,35644468-35644534,
           35644673-35644694,35645053-35645152,35645282-35645414,
           35645483-35645517,35645708-35646409,35646789-35647121,
           35647337-35647601,35647665-35647999,35648105-35648177,
           35648271-35648356,35648479-35648598,35648674-35648741,
           35648825-35648882
          Length = 917

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 646 NSNYSISASRESAEACTSQNTDLSILWHEYRLPQ 545
           NSN SI   R+  E C+  + DL  L+ E  LP+
Sbjct: 310 NSNGSIPCPRKEKEDCSFSSLDLKCLFPEKLLPE 343


>03_06_0376 +
           33479776-33479958,33481055-33481236,33481345-33481469,
           33481858-33482057,33482629-33482762,33483095-33483158,
           33483764-33484441,33484723-33484839
          Length = 560

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/81 (24%), Positives = 37/81 (45%)
 Frame = +1

Query: 109 YTLYRGVPVNKSHLDFFNSLSEMFDVNFWTPPGSLYKPIDFVLAPGDKKVFLKMAEEYDV 288
           +T   G  V K     F +   M +++ +TP  S   P D +L    K +FL +    +V
Sbjct: 329 FTSDHGTVVGKDDQFLFGASLIMINMDHFTP-ASHPSPYDCILDDETKNIFLPIHLSEEV 387

Query: 289 YLSTLIADVQRAFDMQRVKSY 351
           Y+   +    +  D+ +++SY
Sbjct: 388 YVGDPVIKF-KDIDVVKIESY 407


>06_03_0251 +
           18715023-18715106,18715274-18715396,18715509-18715611,
           18716061-18716134,18716208-18716288,18716370-18716522,
           18717435-18717506,18718313-18718396
          Length = 257

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +1

Query: 49  YLISFLLFHPNYCATKKYTNYTLYRG--VPVNKSHLDFFNSLSEMFDVNFWTP 201
           ++  +L  HP YC+   Y   T Y G  VPV   ++    S    FD NF  P
Sbjct: 66  FMKEWLNDHPRYCSHNFYVGGTSYAGKVVPVITQYI----SEGSKFDKNFHVP 114


>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
            29288625-29288903,29289047-29289122,29289725-29289787,
            29292116-29292164,29292413-29292504,29293017-29293068,
            29293209-29293271,29293382-29293431,29293941-29294016,
            29294444-29294656,29294763-29294869,29294966-29295074,
            29295489-29295689,29295773-29296033,29296154-29296171,
            29296287-29296397,29296755-29297030,29297108-29297382,
            29297814-29298165,29298371-29298655,29298715-29299261,
            29301658-29301781,29301871-29301946,29302062-29302136,
            29302300-29302353,29302833-29302892,29302977-29303093,
            29303228-29303361,29303480-29303682,29303879-29303976,
            29304358-29304461,29304537-29304702,29304803-29304925,
            29305047-29305129,29305217-29305358,29305523-29305549,
            29305784-29305854,29305930-29306518
          Length = 2046

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/67 (25%), Positives = 35/67 (52%)
 Frame = -1

Query: 386  SFQSNEPKFLLMYDLTLCISNALCTSAMSVDKYTSYSSAIFRKTFLSPGAKTKSIGLYKE 207
            + Q + PK +L++ L++CIS  L    ++   Y ++ S +   T ++   +T   G+ + 
Sbjct: 1521 ALQESRPKSVLVHSLSVCIS-LLDPKRLASASYQAFRSNLSHGTLVTASPETVD-GMLES 1578

Query: 206  PGGVQKL 186
             G + KL
Sbjct: 1579 LGDLLKL 1585


>04_04_1186 +
           31567425-31567438,31568168-31568254,31568335-31568410,
           31568516-31568590,31568678-31568731,31569722-31569781,
           31569910-31570026,31570389-31570483,31570603-31570805,
           31571224-31571321,31571585-31571688,31571872-31571920,
           31571988-31572110,31572566-31572648,31573533-31573674,
           31574399-31574428,31574452-31574508,31574545-31574615,
           31574715-31575318
          Length = 713

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = -1

Query: 386 SFQSNEPKFLLMYDLTLCISNALCTSAMSVDKYTSYSSAIFRKTFLSPGAKTKSIGLYKE 207
           +F+ + PK +L++ L++CIS  L    + +  Y  + S +   T ++   +T   G+   
Sbjct: 202 AFEDSRPKSVLVHSLSVCIS-LLDPKRLVLASYQVFRSQLSHATLVTASPETVG-GMLDS 259

Query: 206 PGGVQKL 186
            G + KL
Sbjct: 260 LGDLLKL 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,478,644
Number of Sequences: 37544
Number of extensions: 375628
Number of successful extensions: 830
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)