Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29k20
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    28   1.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.5  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    26   4.6  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   8.1  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   8.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.1  

>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +3

Query: 48  HARVYFQDYYYDIVTRDPDDLMREKENEVRALRAFQADCAEDVQVKPDLVVNLKSGD-WQ 224
           + R   ++Y+Y  V      L  + E+ VR LR    +CA+  Q   +++V+ ++ + W+
Sbjct: 76  YLRFSLKNYHYYEVAATCIFLATKVEDSVRKLRDIVINCAKVAQKNSNVLVDEQTKEYWR 135

Query: 225 TEDVSL 242
             DV L
Sbjct: 136 WRDVIL 141


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = -1

Query: 373  SSISFSAMILSFISGILDMASFILNTPCAVMSPSFISTQRAHFLRDTSSVCQSPLFKLTT 194
            S  SF ++   F+S ++  A +IL+ P      SFI     HF + T++           
Sbjct: 1975 SIFSFFSLFWWFLSRVVQ-ARYILSLPFFFFGISFILVAITHFFQKTTACSVIQHIAAYV 2033

Query: 193  KSGLTWTSSAQSAWN 149
             +  + T S   AWN
Sbjct: 2034 YAISSSTGSLYFAWN 2048


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +3

Query: 240 LKKWALCVLMKLGLMTAQGVFKMNEAMSKIPDMNDKI 350
           +K+W LCV++       Q +F +   M  + D++ ++
Sbjct: 561 MKEWFLCVIVDNDFQNGQSLFDVFNKMRSLKDIHPEL 597


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 96  LSSRYRNNSPGNTLWHELPTAQK 28
           LSS Y N+S G +   ELPT+ K
Sbjct: 167 LSSTYGNDSLGESNLEELPTSDK 189


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 353 SRETYRRLPQSPGNNA 400
           SR TYR+LP  P N+A
Sbjct: 97  SRTTYRQLPNEPQNSA 112


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 350 HSRETYRRLPQSPGNNATRRRMELH*MSSSERSRGKF 460
           H+ E  + L QSP    TRR  +L   SS + S+  F
Sbjct: 617 HASENDKSLKQSPFQKLTRRLSDLSVNSSGQISKQDF 653


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 23/81 (28%), Positives = 38/81 (46%)
 Frame = -1

Query: 400 GVVAWRLRQSSISFSAMILSFISGILDMASFILNTPCAVMSPSFISTQRAHFLRDTSSVC 221
           GV  W    +++S+     +F+  I      IL+T  +  S S  S   +  L  TSS+ 
Sbjct: 294 GVTIWDTSLAAMSYDNSSETFVEAIHK----ILDTK-SKHSSSKSSHDSSQGLESTSSIA 348

Query: 220 QSPLFKLTTKSGLTWTSSAQS 158
            +P   +++ S  + TSSA S
Sbjct: 349 LNPTSSISSTSSSSSTSSAIS 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,026
Number of Sequences: 5004
Number of extensions: 57685
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)