Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29k17
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    30   0.36 
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    29   0.48 
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    29   0.84 
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    27   2.6  
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    26   5.9  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    26   5.9  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   7.8  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   7.8  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   7.8  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   7.8  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   7.8  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   7.8  

>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 499 SCRIMW-HLYFTQTCRMLRHFFFRLRSYCDNW 407
           SC+  W ++YF +   M +H   R+  YCD +
Sbjct: 243 SCKFPWTYIYFVECLGMEKHLIDRVGKYCDTF 274


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 407 PVITVRTQPKKKVSQHAARLRKIEMPHNPTRGYVDPAS-VEQHMML 541
           PV++  TQPK +     A   K+ M  +P  G + PA+ +E+HM L
Sbjct: 359 PVLSTTTQPKVQKPVPKAFQPKVPMEISPFSGELVPATELEEHMRL 404


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 551 ASLQASYAVQRKQDQHILLSDYVASLFYAD 462
           A LQ  + VQ +     LL+DY++S+ YAD
Sbjct: 536 AFLQEDHIVQFQSISSALLTDYISSVLYAD 565


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 81  YSNISTSPLSCVCYVNFKL 137
           + N STSP+S V YVN KL
Sbjct: 101 FENASTSPVSDVTYVNTKL 119


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 524 EQHMMLGEMRGTKNYKPPEAQRLKEKPGSAG 616
           EQ+ ++ ++RG   Y P + Q   +KPGS+G
Sbjct: 225 EQNWIINDIRGVC-YNPLKQQWTLDKPGSSG 254


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 562 LSTAHLSKHHMLF--NGSRINISSCRIMWHLYFTQTCRMLR 446
           L  A  S  H+ +  NG+ + +SSC  + + Y TQT  +++
Sbjct: 133 LRPAKASNKHVTYSPNGNFLAVSSCNGILYFYDTQTRELIK 173


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 407 PVITVRTQPKKKVSQHAARLRKIEMPHNPT 496
           P  TVR+  K+  S H++++ K  +P +PT
Sbjct: 252 PQKTVRSIVKQTSSPHSSKMPKHSLPSSPT 281


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 449 QHAARLRKIEMPHNPTRGYVDPASVEQHMMLGEMRGTKNYKPPEAQRLK 595
           Q++  + + EMP + TR Y  PA+     +  E    K+ KPP+ +  K
Sbjct: 466 QNSLSVHESEMPPHVTRDYTQPAA-SATPVPKEKPSEKSEKPPKKKGSK 513


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 566 YKPPEAQRLKEKPGSAGYNNYGKNQPRKKLSRRGQYVWSWY 688
           ++ PE   LK +    G N YGK+ P   LS+  Q  W  Y
Sbjct: 378 FEKPEDFVLKPQREGGGNNTYGKDIP-GLLSKMPQEEWDSY 417


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 33  FISVPPFLYLIIKSFVYSNI 92
           +I++PP +Y+ + S +Y N+
Sbjct: 113 YIALPPSVYVTVSSHIYENL 132


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 422 RTQPKKKVSQHAARLRKIEMPHNPTRGYVDPAS 520
           R QP   +  HA+  RK   P  P  G+  P S
Sbjct: 117 RRQPSSFLDVHASNTRKRGSPDTPDSGHSTPHS 149


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 516 LPLNSI*CLERCAVLRTISHRKHSV 590
           LPL  I C++R + +R ++  +H+V
Sbjct: 12  LPLRVIYCIDRASAIRCLAKSQHAV 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,492
Number of Sequences: 5004
Number of extensions: 49261
Number of successful extensions: 144
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)