Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29k17
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   0.39 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   3.6  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   4.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 620 NNYGKNQPRKKLSRRGQYVWSW 685
           N +  N+PR+KLS++ Q +  W
Sbjct: 18  NEFNINRPRRKLSKKQQMLGIW 39


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/46 (23%), Positives = 15/46 (32%)
 Frame = +2

Query: 524 EQHMMLGEMRGTKNYKPPEAQRLKEKPGSAGYNNYGKNQPRKKLSR 661
           E+  +L E    K Y     +  K       Y  YGK    +   R
Sbjct: 247 EKEKLLEERTSRKRYSRSREREQKSYKNEREYRKYGKTSKERSRDR 292


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 462 RAAC*DTFFFGCVLTVITGMLS 397
           + AC DTF  G ++   +G+ S
Sbjct: 46  KLACTDTFMEGVIVLAFSGLFS 67


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 536 SYAVQRKQDQHILLSDYVASL 474
           +YA + K+D+ +LL++  +SL
Sbjct: 284 NYAEENKRDEIVLLTEAYSSL 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,800
Number of Sequences: 438
Number of extensions: 3577
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)