Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29k16
         (179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0019 + 11931519-11932310                                         25   6.5  
09_06_0308 - 22199389-22199451,22199604-22199924,22200178-222004...    25   8.6  
05_06_0281 + 26912419-26913099                                         25   8.6  

>10_07_0019 + 11931519-11932310
          Length = 263

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 129 NESIGRNGPERGDGXGG 179
           N+ +GR G  RGD  GG
Sbjct: 80  NQRVGRGGGRRGDAEGG 96


>09_06_0308 -
           22199389-22199451,22199604-22199924,22200178-22200423,
           22202152-22203337,22203487-22203551,22204205-22204486,
           22205005-22205106,22205587-22206105
          Length = 927

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 175 PXPSPRSGPFLPMLSFNNDR 116
           P PSP S PFL +LS +  R
Sbjct: 20  PKPSPSSAPFLLLLSPSTPR 39


>05_06_0281 + 26912419-26913099
          Length = 226

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 178 PPXPSPRSGPFLPMLSFNNDRC 113
           PP P P + P  P+ ++   RC
Sbjct: 153 PPPPDPNTPPVQPLSNYGVSRC 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,373,167
Number of Sequences: 37544
Number of extensions: 40266
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)