Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29k16
         (179 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80017-3|AAC52048.1|  294|Homo sapiens survival motor neuron pro...    27   8.2  
U43883-1|AAC50473.1|  294|Homo sapiens survival motor neuron pro...    27   8.2  
U21914-1|AAA64505.1|  293|Homo sapiens U18423; it is not known i...    27   8.2  
U18423-1|AAA66242.1|  294|Homo sapiens spinal muscular atrophy d...    27   8.2  
BC070242-1|AAH70242.1|  282|Homo sapiens survival of motor neuro...    27   8.2  
BC062723-1|AAH62723.1|  294|Homo sapiens survival of motor neuro...    27   8.2  
BC015308-1|AAH15308.1|  294|Homo sapiens survival of motor neuro...    27   8.2  
BC000908-1|AAH00908.1|  282|Homo sapiens SMN1 protein protein.         27   8.2  
AC005031-2|AAC62262.1|  294|Homo sapiens survival of motor neuro...    27   8.2  
AC004999-1|AAC83178.1|  294|Homo sapiens survival motor neuron 1...    27   8.2  

>U80017-3|AAC52048.1|  294|Homo sapiens survival motor neuron
           protein SMN protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 178 PPXPSPRSGPFLPMLSFN 125
           PP P PR GP  P L FN
Sbjct: 198 PPMPGPRLGPGKPGLKFN 215


>U43883-1|AAC50473.1|  294|Homo sapiens survival motor neuron
           protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 178 PPXPSPRSGPFLPMLSFN 125
           PP P PR GP  P L FN
Sbjct: 198 PPMPGPRLGPGKPGLKFN 215


>U21914-1|AAA64505.1|  293|Homo sapiens U18423; it is not known if
           this copy of the gene  protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 178 PPXPSPRSGPFLPMLSFN 125
           PP P PR GP  P L FN
Sbjct: 197 PPMPGPRLGPGKPGLKFN 214


>U18423-1|AAA66242.1|  294|Homo sapiens spinal muscular atrophy
           determining gene protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 178 PPXPSPRSGPFLPMLSFN 125
           PP P PR GP  P L FN
Sbjct: 198 PPMPGPRLGPGKPGLKFN 215


>BC070242-1|AAH70242.1|  282|Homo sapiens survival of motor neuron
           2, centromeric protein.
          Length = 282

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 178 PPXPSPRSGPFLPMLSFN 125
           PP P PR GP  P L FN
Sbjct: 198 PPMPGPRLGPGKPGLKFN 215


>BC062723-1|AAH62723.1|  294|Homo sapiens survival of motor neuron
           1, telomeric protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 178 PPXPSPRSGPFLPMLSFN 125
           PP P PR GP  P L FN
Sbjct: 198 PPMPGPRLGPGKPGLKFN 215


>BC015308-1|AAH15308.1|  294|Homo sapiens survival of motor neuron
           1, telomeric protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 178 PPXPSPRSGPFLPMLSFN 125
           PP P PR GP  P L FN
Sbjct: 198 PPMPGPRLGPGKPGLKFN 215


>BC000908-1|AAH00908.1|  282|Homo sapiens SMN1 protein protein.
          Length = 282

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 178 PPXPSPRSGPFLPMLSFN 125
           PP P PR GP  P L FN
Sbjct: 198 PPMPGPRLGPGKPGLKFN 215


>AC005031-2|AAC62262.1|  294|Homo sapiens survival of motor neuron 1
           product protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 178 PPXPSPRSGPFLPMLSFN 125
           PP P PR GP  P L FN
Sbjct: 198 PPMPGPRLGPGKPGLKFN 215


>AC004999-1|AAC83178.1|  294|Homo sapiens survival motor neuron 1
           protein protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 178 PPXPSPRSGPFLPMLSFN 125
           PP P PR GP  P L FN
Sbjct: 198 PPMPGPRLGPGKPGLKFN 215


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,873,913
Number of Sequences: 237096
Number of extensions: 225122
Number of successful extensions: 425
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 76,859,062
effective HSP length: 39
effective length of database: 67,612,318
effective search space used: 1352246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)