Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29k15
         (390 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0368 + 7840665-7841975                                           29   1.3  
02_01_0313 + 2097302-2097657,2099389-2100502                           27   4.0  
06_03_0637 - 22995831-22996667,22997200-22997694                       27   5.3  

>03_02_0368 + 7840665-7841975
          Length = 436

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +1

Query: 34  ESFLARSFHLNFSVKS*WQCTTEDMSEAPKAAVTACIHSNLATQQWADVALFPLVHHIDS 213
           ESFL R+FH +F + +     T D +   +A + A  + ++A   W +V L    H+ + 
Sbjct: 217 ESFLNRAFHADFELDTEGDVHTADPAGRCEANLAA--YHSIAALTWEEVLLHGTKHYSEG 274

Query: 214 CNQ 222
            ++
Sbjct: 275 LSR 277


>02_01_0313 + 2097302-2097657,2099389-2100502
          Length = 489

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 209 SIWWTRGKSATSAHCWV 159
           S WW  G++A +  CWV
Sbjct: 3   SSWWWHGRAAAAVACWV 19


>06_03_0637 - 22995831-22996667,22997200-22997694
          Length = 443

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +1

Query: 85  WQCTTEDMSEAPKAAVTACIHSN------LATQQWADVALFPL 195
           WQC T  ++  P AAV  C  ++      L T  W + A+FP+
Sbjct: 276 WQCRTRAIAADPAAAVKLCFFASARQVLGLETGYWGN-AIFPV 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,579,570
Number of Sequences: 37544
Number of extensions: 142203
Number of successful extensions: 409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)