Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29k11
(457 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66567-3|CAA91489.1| 444|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z81047-9|CAB02835.2| 339|Caenorhabditis elegans Hypothetical pr... 28 3.7
AF016441-7|AAB65908.1| 344|Caenorhabditis elegans Hypothetical ... 27 4.9
Z36753-9|CAA85337.1| 445|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z80216-11|CAN99667.1| 984|Caenorhabditis elegans Hypothetical p... 27 8.6
Z80216-10|CAB02286.4| 949|Caenorhabditis elegans Hypothetical p... 27 8.6
Z27080-5|CAA81605.1| 1247|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z22176-14|CAA80143.1| 1247|Caenorhabditis elegans Hypothetical p... 27 8.6
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 27 8.6
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 27 8.6
AL023823-2|CAN99714.1| 984|Caenorhabditis elegans Hypothetical ... 27 8.6
AL023823-1|CAA19441.4| 949|Caenorhabditis elegans Hypothetical ... 27 8.6
AF101078-1|AAC72406.1| 1247|Caenorhabditis elegans CLU-1 protein. 27 8.6
>Z66567-3|CAA91489.1| 444|Caenorhabditis elegans Hypothetical
protein ZK455.3 protein.
Length = 444
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 239 MFPVWTQSFVNFIKQTLAYHS 177
+FP WT S +NF + T AY S
Sbjct: 109 IFPEWTCSMINFFQHTSAYCS 129
>Z81047-9|CAB02835.2| 339|Caenorhabditis elegans Hypothetical
protein C41G6.11 protein.
Length = 339
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 232 GNIWICRNSYNFSVCWRETQDRTSKHWRLNSII 330
GN C S+ FS+ ++ + ++ KH++++SII
Sbjct: 45 GNFKFCLLSFQFSIVEKKLKVKSIKHFQVSSII 77
>AF016441-7|AAB65908.1| 344|Caenorhabditis elegans Hypothetical
protein M03F8.1 protein.
Length = 344
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 350 VDHAFFDIIEFNRQCFDVLSCVSRQHTEKLYEFRQIQ 240
VDH + D + CF L+C+ LY+ Q Q
Sbjct: 275 VDHVYCDTFVSPKVCFLELACIGILFLNNLYDVNQTQ 311
>Z36753-9|CAA85337.1| 445|Caenorhabditis elegans Hypothetical
protein T09A5.11 protein.
Length = 445
Score = 27.1 bits (57), Expect = 6.5
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = -3
Query: 263 LYEFRQIQMFPVWTQSFVNFIKQTLAYHSA 174
LY+ +Q+ + P+W + FI+ Y+++
Sbjct: 380 LYDVQQVSVRPLWHTQYERFIRSAYPYYAS 409
>Z80216-11|CAN99667.1| 984|Caenorhabditis elegans Hypothetical
protein F10G8.8b protein.
Length = 984
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 353 SVDHAFFDIIEFNRQCFDV-LSCVSRQHTEKLYE 255
SV +F ++ R+ FD L CV ++H E+L E
Sbjct: 763 SVKTSFSQMLAEQRKTFDEELDCVKKEHEERLME 796
>Z80216-10|CAB02286.4| 949|Caenorhabditis elegans Hypothetical
protein F10G8.8a protein.
Length = 949
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 353 SVDHAFFDIIEFNRQCFDV-LSCVSRQHTEKLYE 255
SV +F ++ R+ FD L CV ++H E+L E
Sbjct: 763 SVKTSFSQMLAEQRKTFDEELDCVKKEHEERLME 796
>Z27080-5|CAA81605.1| 1247|Caenorhabditis elegans Hypothetical
protein F55H2.6 protein.
Length = 1247
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 303 EALAIKFDNIKESVIDGIRKGKS*Y*LNMDVCNTLARGQCCCIKKNIL 446
E L F+ ++S+ + + + +S Y ++ D N ARG + NIL
Sbjct: 358 EELQTTFEMTRKSISERVIRDRSYYKIHADYVNAAARGVQSILDGNIL 405
>Z22176-14|CAA80143.1| 1247|Caenorhabditis elegans Hypothetical
protein F55H2.6 protein.
Length = 1247
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 303 EALAIKFDNIKESVIDGIRKGKS*Y*LNMDVCNTLARGQCCCIKKNIL 446
E L F+ ++S+ + + + +S Y ++ D N ARG + NIL
Sbjct: 358 EELQTTFEMTRKSISERVIRDRSYYKIHADYVNAAARGVQSILDGNIL 405
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 228 LDSVFRKLHQTNSRLSFCR 172
LDS+F+K+ TN RL+F R
Sbjct: 1173 LDSIFQKVTPTNQRLNFDR 1191
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 228 LDSVFRKLHQTNSRLSFCR 172
LDS+F+K+ TN RL+F R
Sbjct: 1214 LDSIFQKVTPTNQRLNFDR 1232
>AL023823-2|CAN99714.1| 984|Caenorhabditis elegans Hypothetical
protein F10G8.8b protein.
Length = 984
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 353 SVDHAFFDIIEFNRQCFDV-LSCVSRQHTEKLYE 255
SV +F ++ R+ FD L CV ++H E+L E
Sbjct: 763 SVKTSFSQMLAEQRKTFDEELDCVKKEHEERLME 796
>AL023823-1|CAA19441.4| 949|Caenorhabditis elegans Hypothetical
protein F10G8.8a protein.
Length = 949
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 353 SVDHAFFDIIEFNRQCFDV-LSCVSRQHTEKLYE 255
SV +F ++ R+ FD L CV ++H E+L E
Sbjct: 763 SVKTSFSQMLAEQRKTFDEELDCVKKEHEERLME 796
>AF101078-1|AAC72406.1| 1247|Caenorhabditis elegans CLU-1 protein.
Length = 1247
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 303 EALAIKFDNIKESVIDGIRKGKS*Y*LNMDVCNTLARGQCCCIKKNIL 446
E L F+ ++S+ + + + +S Y ++ D N ARG + NIL
Sbjct: 358 EELQTTFEMTRKSISERVIRDRSYYKIHADYVNAAARGVQSILDGNIL 405
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,198,867
Number of Sequences: 27780
Number of extensions: 172353
Number of successful extensions: 549
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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