Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29k05
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr...    31   0.96 
Z92812-6|CAB07280.1|  372|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical...    28   6.8  

>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical
           protein F22E10.2 protein.
          Length = 1324

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 30  YLPTVFLDFISVYVCRFKSSQQI*KYVPVDFL*TASFYT 146
           Y P+VF  F++  +CR   S+Q+ ++ PV  L    F T
Sbjct: 48  YYPSVFEKFVNFLLCRCDLSEQVLEFQPVSLLQLFRFAT 86


>Z92812-6|CAB07280.1|  372|Caenorhabditis elegans Hypothetical
           protein T03E6.6 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 161 LVSAGYIIKGNTYLFNV*IRTLTIKSKMLVGILYTI 268
           L S  ++  GN Y FN  +R++  + K +  IL+T+
Sbjct: 303 LPSGIFLWLGNLYKFNTVVRSIVFEGKNVTSILFTV 338


>AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical
           protein Y75B8A.33 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 107 RTSRFFVNCQFLYYSCKLLVSAGYIIKGNTYL 202
           +  R F+N  F +    LLV   + IK NTY+
Sbjct: 11  KRQRLFINVSFFFLIIGLLVLGVFTIKKNTYI 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,037,319
Number of Sequences: 27780
Number of extensions: 240513
Number of successful extensions: 418
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)