Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29k02
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    29   0.83 
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   2.5  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    26   5.9  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   7.8  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    25   7.8  

>SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 116

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 202 VARPDIQRRVYCRASSIRMVGALKQDFKNNETICKI 95
           +  PD   RVYC+ +    VG+L  D K +  +CK+
Sbjct: 1   MVNPDKTSRVYCKYTCCGYVGSLDHD-KQDAHVCKL 35


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 620 PVHRYIRMHRTFYPLGHDDFKMIYSICSIYICLDETTRY 504
           P+ + +  + + Y L +DD   +Y ICS  I L + + +
Sbjct: 230 PIRQRLNPYFSNYNLTNDDILNLYGICSYEIALQDYSEF 268


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 650 KLLPASGIRTPVHRYIRMHRTF-YPLG 573
           K + +SG+   V  ++R HRTF Y +G
Sbjct: 11  KAIVSSGVLNSVSAFVRRHRTFVYTIG 37


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 175 VYCRASSIRMVGALKQDFKNNETICKIPG**LACVAHSLVHNYRQFVD 32
           +Y R  SI  +    Q+FK +E    +     AC+ HSL   YR F D
Sbjct: 677 LYERRISIGKIVLTLQNFKKSENPRDLDL--FACLQHSLFDEYRFFPD 722


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 295 RDIITSNSQTSLSTESPCR 351
           +D+I  N Q S+ST S CR
Sbjct: 119 KDVIVENVQISISTGSECR 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,189
Number of Sequences: 5004
Number of extensions: 60709
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)