Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29k02
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    29   3.1  
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    29   4.1  

>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 614 HRYIRMHRTFYPLGHDDFKMIYSICSIYICLDETTRYRS 498
           H Y+  HR    LG  + K+  + C +YI L   +R +S
Sbjct: 446 HAYVPRHRYLPNLGDREKKLKINFCQLYIRLPNKSRVKS 484


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
           protein Y73F8A.5 protein.
          Length = 1019

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +1

Query: 226 PIRQRISGHKSNAIYQSVGTAFIRDIITSNSQTSLSTESPCRYYGRCDKENDTRIKRPIG 405
           P+R+  +   S A+Y+ V  +  RD +   S T L   +P   +  C K N    K  +G
Sbjct: 329 PVREPCTNGSSRAVYKKVLPSICRDDLP--SATKLPPPTP---WKTCPKCNPGMEKNKLG 383

Query: 406 ECRQPTKDVRSE 441
            C    KD  S+
Sbjct: 384 VCEFCKKDYFSD 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,213,944
Number of Sequences: 27780
Number of extensions: 344981
Number of successful extensions: 843
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)