Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29k01
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    27   1.6  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    27   2.8  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   3.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.4  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   8.5  

>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 19  IINIL-IRTASQNSSIE*CFFSFENYLSFFRRNSQCGTSPKHDGSF 153
           I+N+L +   S    +E CFF F+N L   +  ++   S +H  SF
Sbjct: 638 ILNLLRVEGISPEFMLERCFFQFQNSLEVPKLEAKLEESQQHYDSF 683


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 98  VFSGEIPNVGHHLNMMDLSFDFIIIGGLL 184
           +  G I NVGH +  + L    +++GGLL
Sbjct: 368 IADGGIQNVGHMVKSLSLGATAVMMGGLL 396


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 160  FYNYWRPT-LLRSRSTFNKIKGLL 228
            F  YWR + LLR+R  FN + GL+
Sbjct: 1081 FVAYWRDSSLLRARVAFNIVAGLI 1104


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 83   NEKKHYSIDEFCEAVRIKILI 21
            N+K H SID+F + +R +ILI
Sbjct: 2253 NDKIHESIDQFFKDIRKQILI 2273


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 64  E*CFFSFENYLSFFRRNSQCGTSPKHDGS 150
           E CF+ F+N L+   R     T+   DGS
Sbjct: 685 EQCFYQFKNKLALIDRKQMEETNSDEDGS 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,067
Number of Sequences: 5004
Number of extensions: 36730
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)