Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29k01
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    26   0.25 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   5.3  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   9.2  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 128 HHLNMMDLSFDFIIIGG 178
           H   + DLS+DFI++GG
Sbjct: 60  HSSRIPDLSYDFIVVGG 76


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 417 YHLLTERNEFVRIKKTSS 364
           +H+ T  NEF+RI  + S
Sbjct: 108 FHIATTSNEFIRIHHSGS 125


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 417 YHLLTERNEFVRIKKTSS 364
           +H+ T  NEF+RI  + S
Sbjct: 108 FHIATTSNEFIRIHHSGS 125


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 417 YHLLTERNEFVRIKKTSS 364
           +H+ T  NEF+RI  + S
Sbjct: 47  FHIATTSNEFIRIHHSGS 64


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 88  NYLSFFRRNSQCGTSPKHDGS 150
           NY       S  G+SP+H GS
Sbjct: 54  NYAQQHNSPSPTGSSPQHSGS 74


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 115 NFSGKNSNNFQTRKSI 68
           NF G   NNF+T   I
Sbjct: 37  NFDGNYINNFETSNGI 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,543
Number of Sequences: 438
Number of extensions: 2573
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)