Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29j17
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    28   1.4  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   3.1  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   3.1  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   4.2  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    26   5.5  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   5.5  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    25   7.3  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   9.6  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    25   9.6  

>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 54  RLNVAVSAMSSKTDNSLKSKGLRSGLDDGLSSALIKSGTLVSSQAWVVY 200
           R    VS ++ K   +  S  L+SG DD   SAL+++  +    AWV Y
Sbjct: 695 RRGKTVSYLNQKLWLTAASLFLKSGNDDQARSALLEAKKIDHECAWVYY 743


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 166 PDFIRAEDRPSSSPDLNPLDFKLLSVLEDIADTATLSL 53
           P F+R + + S+SP  + +D  LLS +  + ++   +L
Sbjct: 164 PFFVRRQSQSSTSPVSDSVDENLLSAVSSVTESVETNL 201


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 389 TSRKQSARHYHFNDSPPVRPELT 321
           TSR++S+ + H + SPP  P +T
Sbjct: 148 TSRRRSSHNQHEDSSPPHEPSVT 170


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 467  VNLIDNEPVNHSTASGELCLYSICEATSRKQSARHYHFNDSPPVRPELT 321
            VN + NEP +   +S  L      E    +Q    Y+F+ SP +R +L+
Sbjct: 925  VNRVLNEPSSSPLSSSSLKSPLSKEGVLNQQGHEQYNFSLSPSIRNKLS 973


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
 Frame = -3

Query: 560 NKKQRFELFDPLNGESPICVTL*FKIIK--HFTVNLIDNEPVNHSTASGELCLY--SICE 393
           NKK     F P    +  C TL +  ++  HF      +E  N ST    L  Y  S  E
Sbjct: 617 NKKLSNAYFVP-RARATTCTTLTYVTVEPSHF-----QDEDCNESTNMLSLVGYMDSYPE 670

Query: 392 ATSRKQSARHYHFNDS 345
           ATS  Q    YH  DS
Sbjct: 671 ATSNIQKMNSYHIKDS 686


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = -3

Query: 464 NLIDNEPVNHSTASGELCLYSICEATSRKQSARHYHFNDSPPVRPE 327
           ++I + P +H   +GE+CL ++ E       + H H++ +    P+
Sbjct: 563 SVIIDIPRSHFDNAGEVCLENLAEPDEIADDSIHLHYDAAQENSPQ 608


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 367 RADCFLEVASHIEYKHSSPEAV 432
           +AD  L  + H+ YK+ SPE V
Sbjct: 83  KADGPLNFSKHLSYKYQSPETV 104


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +2

Query: 506 KSATLRSKGQIIQNVAFYSSTKI*NRRYTKYIEHNMILKLDCYHLKY 646
           KS  L     +      + +T +  RR+T  I   +I   DC H+ Y
Sbjct: 576 KSYVLFKNNLVFSETKHFGTTPVSFRRFTMNIGTYIICNNDCPHMVY 622


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 123 SGLDDGLSSALIKSGTLVSSQAWVVY 200
           SGL +GL   ++  GTL  +Q W++Y
Sbjct: 273 SGLWNGLGVRIVMIGTLTGAQ-WLIY 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,179
Number of Sequences: 5004
Number of extensions: 57495
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)