Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29j17
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical ... 62 4e-10
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 31 0.95
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 31 0.95
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 31 0.95
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 30 1.7
U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 30 1.7
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 30 1.7
U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical ... 29 2.2
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 29 2.2
U55374-1|AAP82639.1| 392|Caenorhabditis elegans Hypothetical pr... 28 6.7
U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical pr... 28 6.7
>AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical
protein H28G03.4 protein.
Length = 459
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/50 (56%), Positives = 33/50 (66%)
Frame = -1
Query: 232 FQQNSALGHKA*TTQAWLETNVPDFIRAEDRPSSSPDLNPLDFKLLSVLE 83
FQQ+ A HK QAW E+N PDFI P SSPDLNP+D+ + SVLE
Sbjct: 307 FQQDGAPAHKHKNVQAWCESNFPDFIAFNQWPPSSPDLNPMDYSVWSVLE 356
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 244 RTCIFQQNSALGHKA*TTQAWLETNVPDFIRAEDRPSSSPDLNPLD 107
R +FQQ++ H + ++W + + D PS SPDLNP++
Sbjct: 170 RGFVFQQDNDPKHTSLHVRSWFQRR---HVHLLDWPSQSPDLNPIE 212
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 244 RTCIFQQNSALGHKA*TTQAWLETNVPDFIRAEDRPSSSPDLNPLD 107
R +FQQ++ H + ++W + + D PS SPDLNP++
Sbjct: 240 RGFVFQQDNDPKHTSLHVRSWFQRR---HVHLLDWPSQSPDLNPIE 282
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 244 RTCIFQQNSALGHKA*TTQAWLETNVPDFIRAEDRPSSSPDLNPLD 107
R +FQQ++ H + ++W + + D PS SPDLNP++
Sbjct: 240 RGFVFQQDNDPKHTSLHVRSWFQRR---HVHLLDWPSQSPDLNPIE 282
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 244 RTCIFQQNSALGHKA*TTQAWLETNVPDFIRAEDRPSSSPDLNPLD 107
R +FQQ++ H + ++W + + D PS SPDLNP++
Sbjct: 211 RGFVFQQDNDPKHTSLHVRSWFQRRRVHLL---DWPSQSPDLNPIE 253
>U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical
protein F18C5.7 protein.
Length = 343
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 244 RTCIFQQNSALGHKA*TTQAWLETNVPDFIRAEDRPSSSPDLNPLD 107
R +FQQ++ H + ++W + + D PS SPDLNP++
Sbjct: 240 RGFVFQQDNDPKHTSLHVRSWFQRRRVHLL---DWPSQSPDLNPIE 282
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 244 RTCIFQQNSALGHKA*TTQAWLETNVPDFIRAEDRPSSSPDLNPLD 107
R +FQQ++ H + ++W + + D PS SPDLNP++
Sbjct: 170 RGFVFQQDNDPKHTSLHVRSWFQRRRVHLL---DWPSQSPDLNPIE 212
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 244 RTCIFQQNSALGHKA*TTQAWLETNVPDFIRAEDRPSSSPDLNPLD 107
R +FQQ++ H + ++W + + D PS SPDLNP++
Sbjct: 170 RGFVFQQDNDPKHTSLHVRSWFQRRRVHLL---DWPSQSPDLNPIE 212
>U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical
protein R10H1.3 protein.
Length = 329
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = -1
Query: 232 FQQNSALGHKA*TTQAWLETNVPDFIRAEDRPSSSPDLNPLDFKLLSVLEDI--ADTATL 59
FQQ++A H + +T+ + + + + D P+ SPDLNP++ L +L I A T
Sbjct: 228 FQQDNATIHVSNSTRDYFKLKKINLL---DWPARSPDLNPIE-NLWGILVRIVYAQNKTY 283
Query: 58 SLLKTLEQAVV 26
+ +L+Q ++
Sbjct: 284 PTVASLKQGIL 294
>AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical
protein W07E6.6 protein.
Length = 329
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = -1
Query: 232 FQQNSALGHKA*TTQAWLETNVPDFIRAEDRPSSSPDLNPLDFKLLSVLEDI--ADTATL 59
FQQ++A H + +T+ + + + + D P+ SPDLNP++ L +L I A T
Sbjct: 228 FQQDNATIHVSNSTRDYFKLKKINLL---DWPARSPDLNPIE-NLWGILVRIVYAQNKTY 283
Query: 58 SLLKTLEQAVV 26
+ +L+Q ++
Sbjct: 284 PTVASLKQGIL 294
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = -1
Query: 232 FQQNSALGHKA*TTQAWLETNVPDFIRAEDRPSSSPDLNPLDFKLLSVLEDI--ADTATL 59
FQQ++A H + +T+ + + + + D P+ SPDLNP++ L +L I A T
Sbjct: 358 FQQDNATIHVSNSTRDYFKLKKINLL---DWPARSPDLNPIE-NLWGILVRIVYAQNKTY 413
Query: 58 SLLKTLEQAVV 26
+ +L+Q ++
Sbjct: 414 PTVASLKQGIL 424
>U55374-1|AAP82639.1| 392|Caenorhabditis elegans Hypothetical
protein T02C5.1b protein.
Length = 392
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -3
Query: 656 NKLYISNGNNPILISYYVQYI*YTYDFKSSSKNKKQRFELF-DPLNGESPICVTL*FKII 480
NK + ++ +L+SY + + + DF +K K + +F D + E + + I
Sbjct: 70 NKPNLDKISDEVLVSYQTKCLMSSLDFIGMTKLKDELVNVFDDEKDSEEVEELPIKDNFI 129
Query: 479 KHFTVNLIDNEPVNHSTASGEL 414
K + +ID+ +N+ A L
Sbjct: 130 KGENLEMIDSNEINYDMARNSL 151
>U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical
protein K10B3.2 protein.
Length = 141
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = -1
Query: 235 IFQQNSALGHKA*TTQAWLETNVPDFIRAEDRPSSSPDLNPLDFKLLSVLEDI--ADTAT 62
IF Q++A H + +T+ + + + + D P+ SPDLNP++ L +L I A T
Sbjct: 39 IFCQDNATIHVSNSTRDYFKLKKINLL---DWPARSPDLNPIE-NLWGILVRIVYAQNKT 94
Query: 61 LSLLKTLEQAVV 26
+ +L+Q ++
Sbjct: 95 YPTVASLKQGIL 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035,417
Number of Sequences: 27780
Number of extensions: 307566
Number of successful extensions: 722
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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