Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29j16
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase su... 118 4e-27
U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase su... 117 8e-27
AC024880-9|AAK85515.1| 446|Caenorhabditis elegans Hypothetical ... 34 0.099
AL161712-12|CAC70144.1| 789|Caenorhabditis elegans Hypothetical... 30 1.6
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 29 2.1
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 29 2.1
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 29 2.1
Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr... 29 3.7
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ... 29 3.7
AC084152-6|AAK39316.1| 286|Caenorhabditis elegans Hypothetical ... 28 4.9
AC024826-12|AAF60792.1| 323|Caenorhabditis elegans Hypothetical... 28 4.9
Z99277-2|CAB16487.1| 557|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF016444-6|AAB65933.1| 330|Caenorhabditis elegans Serpentine re... 28 6.5
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 27 8.6
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 27 8.6
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 27 8.6
>U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform b protein.
Length = 228
Score = 118 bits (284), Expect = 4e-27
Identities = 68/189 (35%), Positives = 106/189 (56%), Gaps = 6/189 (3%)
Frame = +1
Query: 91 ITNLLINIMSCIFRR-FMCTVGLAK----KPPIPVFGVEGRYVSALYSAAAQKNQLDDVE 255
+T L +M+ + +R F + LAK K PI V GVEGRY +ALYSA ++N+LD +
Sbjct: 14 LTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQIS 73
Query: 256 KHLQILNKELLKPKMI-DFIETCVINSAAKAKMLKQVANEAGMPDTAINFLELVAENGRL 432
L + K +F+ + + K ++ ++ + G+ NFL L+AENGRL
Sbjct: 74 TDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENGRL 133
Query: 433 KLLRKMINKFLAVMVAHRNEALCEVITAQPLDDSTRKILMDALKKFVKEGKNIQLTEKVD 612
L +++ F ++M AHR E +V +A+ L S +K L DAL K K G+ + +T V
Sbjct: 134 NKLESVVSSFESIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYAVK 193
Query: 613 PSIMGGMIV 639
PSI+GG++V
Sbjct: 194 PSILGGLVV 202
>U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform a protein.
Length = 207
Score = 117 bits (281), Expect = 8e-27
Identities = 65/175 (37%), Positives = 98/175 (56%), Gaps = 5/175 (2%)
Frame = +1
Query: 130 RRFMCTVGLAK----KPPIPVFGVEGRYVSALYSAAAQKNQLDDVEKHLQILNKELLKPK 297
R F + LAK K PI V GVEGRY +ALYSA ++N+LD + L + K
Sbjct: 7 RGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQISTDLNNVRSVYKDNK 66
Query: 298 MI-DFIETCVINSAAKAKMLKQVANEAGMPDTAINFLELVAENGRLKLLRKMINKFLAVM 474
+F+ + + K ++ ++ + G+ NFL L+AENGRL L +++ F ++M
Sbjct: 67 KFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENGRLNKLESVVSSFESIM 126
Query: 475 VAHRNEALCEVITAQPLDDSTRKILMDALKKFVKEGKNIQLTEKVDPSIMGGMIV 639
AHR E +V +A+ L S +K L DAL K K G+ + +T V PSI+GG++V
Sbjct: 127 RAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYAVKPSILGGLVV 181
>AC024880-9|AAK85515.1| 446|Caenorhabditis elegans Hypothetical
protein Y97E10AR.6 protein.
Length = 446
Score = 33.9 bits (74), Expect = 0.099
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = -2
Query: 425 PFSATSSRKFMAVSGIPASFATCFNIFAFA 336
PFSA+ SR F S I A F CF+IF F+
Sbjct: 9 PFSASFSRVFSVFSPISAFFCFCFSIFPFS 38
>AL161712-12|CAC70144.1| 789|Caenorhabditis elegans Hypothetical
protein Y66D12A.15 protein.
Length = 789
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 208 ALYSAAAQKNQLDDVEKHLQILNKELLKPKMIDFIETCVINSAAKAKML 354
+LY+A + Q D+ ++L+ L+K L +I F++ C + S K K++
Sbjct: 122 SLYAAVSVGLQTKDIIEYLERLSKSQLPKGVITFVQMCTV-SYGKVKLV 169
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 409 LVAENGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLDDS 534
L A+ + ++L+ +I K ++ HR+ +CE + L+DS
Sbjct: 190 LAAQLNQFEILQMLIRKDASIEKPHRHSCICETCDRERLNDS 231
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 409 LVAENGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLDDS 534
L A+ + ++L+ +I K ++ HR+ +CE + L+DS
Sbjct: 170 LAAQLNQFEILQMLIRKDASIEKPHRHSCICETCDRERLNDS 211
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 409 LVAENGRLKLLRKMINKFLAVMVAHRNEALCEVITAQPLDDS 534
L A+ + ++L+ +I K ++ HR+ +CE + L+DS
Sbjct: 170 LAAQLNQFEILQMLIRKDASIEKPHRHSCICETCDRERLNDS 211
>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical
protein K08E7.9 protein.
Length = 1321
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 283 VLYSKFANVFQRHPIDFFVQPHYRVLIHTAL 191
V ++ F NVF +P DF Q H+ L+ L
Sbjct: 773 VFFTSFMNVFAGNPADFLSQGHFWALMFLVL 803
>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
protein.
Length = 1321
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 283 VLYSKFANVFQRHPIDFFVQPHYRVLIHTAL 191
V ++ F NVF +P DF Q H+ L+ L
Sbjct: 773 VFFTSFMNVFAGNPADFLSQGHFWALMFLVL 803
>AC084152-6|AAK39316.1| 286|Caenorhabditis elegans Hypothetical
protein Y102A11A.6 protein.
Length = 286
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -1
Query: 579 FLYELFKGIHKDFSGTIIKWLCSYYFT*CLIS-VRYHNSKKLV 454
++ ++ +H+D+SGTI+ SY +T S + YH+S K++
Sbjct: 183 YILKIVPSVHEDYSGTILN---SYQYTFGHKSYITYHHSGKII 222
>AC024826-12|AAF60792.1| 323|Caenorhabditis elegans Hypothetical
protein Y55F3AM.11 protein.
Length = 323
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 202 VSALYSAAAQKNQLDDVEKHLQILNKELLKPKMIDFIETCVI 327
+S A K +DD+ KH + N E+LK + TC+I
Sbjct: 207 ISVATDPATSKYTIDDLAKHFNVSNIEILKIDIEGAELTCLI 248
>Z99277-2|CAB16487.1| 557|Caenorhabditis elegans Hypothetical
protein Y53C12A.3 protein.
Length = 557
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 292 VSKVLYSKFANVFQRHPIDFFVQPHYRVLIHTALQHQI 179
+ + L S F +F H +++F YRV + +HQ+
Sbjct: 294 IKETLPSLFIKIFSEHVLNYFQDIIYRVPMSVISEHQV 331
>AF016444-6|AAB65933.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 7 protein.
Length = 330
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 292 VSKVLYSKFANVFQRHPIDFFVQPHYRVLIHTALQHQILVL 170
V+++ + +FQ H FF+ R+++HT H L+L
Sbjct: 50 VARLFHVNVIIIFQVHWFGFFLHCSNRIVLHTIDLHNYLIL 90
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +1
Query: 277 KELLKPKMIDFIETCVINSAAKAKMLKQVAN-----EAGMPDTAINFLELVAENGRLKLL 441
+EL K +E C + +A ++K + + + PDT L L A NG + ++
Sbjct: 451 EELSNKKNTPLMEACAGDQGDQAGVVKLLLSKHAEVDVSNPDTGDTPLSLAARNGYIAIM 510
Query: 442 RKMINK 459
+ +I K
Sbjct: 511 KMLIEK 516
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +1
Query: 277 KELLKPKMIDFIETCVINSAAKAKMLKQVAN-----EAGMPDTAINFLELVAENGRLKLL 441
+EL K +E C + +A ++K + + + PDT L L A NG + ++
Sbjct: 451 EELSNKKNTPLMEACAGDQGDQAGVVKLLLSKHAEVDVSNPDTGDTPLSLAARNGYIAIM 510
Query: 442 RKMINK 459
+ +I K
Sbjct: 511 KMLIEK 516
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +1
Query: 277 KELLKPKMIDFIETCVINSAAKAKMLKQVAN-----EAGMPDTAINFLELVAENGRLKLL 441
+EL K +E C + +A ++K + + + PDT L L A NG + ++
Sbjct: 451 EELSNKKNTPLMEACAGDQGDQAGVVKLLLSKHAEVDVSNPDTGDTPLSLAARNGYIAIM 510
Query: 442 RKMINK 459
+ +I K
Sbjct: 511 KMLIEK 516
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +1
Query: 277 KELLKPKMIDFIETCVINSAAKAKMLKQVAN-----EAGMPDTAINFLELVAENGRLKLL 441
+EL K +E C + +A ++K + + + PDT L L A NG + ++
Sbjct: 451 EELSNKKNTPLMEACAGDQGDQAGVVKLLLSKHAEVDVSNPDTGDTPLSLAARNGYIAIM 510
Query: 442 RKMINK 459
+ +I K
Sbjct: 511 KMLIEK 516
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,162,265
Number of Sequences: 27780
Number of extensions: 331905
Number of successful extensions: 1038
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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