Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29j12
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.4  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   3.1  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   3.1  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   3.1  

>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +2

Query: 326 WFMKRYAFKCGKLKFIRKLLN--WNQHQIIPLAYIWFCI 436
           WF   Y+   G    I   L   +   ++  L YIWFCI
Sbjct: 86  WFPASYSLTVGTFILIAGRLGDIYGHKKMFVLGYIWFCI 124


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 157 FVESMEPSRIDSIGNQAWVDWHIRLQKLNQQAVLEASSMREE 282
           F  SM+P+ +   GN A  D+H++L  L +Q        R+E
Sbjct: 591 FSMSMDPANMQQ-GNHALSDYHMQLMLLEEQNKKRLMMARQE 631


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 317 SFPQEIRVSLVSSSRIEDASRTACWFNFWSLMCQSTH 207
           SFP E +VS++ +S ++ +     WF   + +C  TH
Sbjct: 171 SFPSEPQVSVLFTSSVKRSPHGVSWF---ATICSETH 204


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
 Frame = +2

Query: 278 RSLLKKL*FLVENCPYWFMKRYAFKCGKLKFIRKLLNWNQHQIIPLAYIWFCI---TKQP 448
           R+LL  + FLV      F+  YA+    +  I K  NWNQ+  +  A I F +   T   
Sbjct: 336 RNLLYAIRFLVCVLTMEFLLHYAY----VTAISKDGNWNQYSAVESAMISFIVLFMTWLK 391

Query: 449 RWDCWKLFCFTRTARPVSPKSPLICSNTH*IS*QHFWLLLNYAGDRFVI 595
               W+LF        + P   ++    +  S   FW   + + +R++I
Sbjct: 392 LLIPWRLFRLWSLIDDIEPPENIVRCMCNNYSAVGFWRAWHRSFNRWLI 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,984
Number of Sequences: 5004
Number of extensions: 59432
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)