Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29j12
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948...    29   3.3  
03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376     29   3.3  
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454...    28   5.7  
10_05_0013 + 7986281-7986434,7986664-7986743,7987583-7987656,798...    28   7.5  
03_05_0638 + 26317630-26317971,26318058-26318594,26318954-263197...    27   9.9  
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621...    27   9.9  

>05_06_0132 +
           25893241-25893435,25894266-25894487,25894567-25894863,
           25894944-25895111,25895201-25895368,25895456-25895536,
           25895704-25895770,25895874-25895971,25896587-25896659,
           25896753-25896823,25896919-25896968,25897698-25897810,
           25898182-25898300,25898629-25898721,25899025-25899051,
           25899422-25899823,25900467-25900513,25900612-25900651,
           25900733-25900795,25900881-25901018,25901873-25902031,
           25902111-25902164,25902324-25902392,25902514-25902643,
           25902909-25902949,25903133-25903178,25903200-25903357,
           25903560-25903605,25903702-25903853,25904022-25904243
          Length = 1202

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 112 KDQQLNALDAGELDLFVESMEPSRIDSIGNQAWVDWHIR--LQKLNQQAVLEASSMREEL 285
           ++Q     DA  L  +   M    IDS+ N A+++W ++  LQK+  + + E S     L
Sbjct: 200 REQMSYTYDA--LKCYAPEMVEVLIDSVRNPAFLEWEVKEQLQKIKSE-ISEVSGDPHGL 256

Query: 286 TKETLISCG 312
             E L S G
Sbjct: 257 LMEALHSAG 265


>03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376
          Length = 798

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 404 IIPLAYIWFCITKQPRWDCWKLFCFTRTARPVSPKSPL 517
           ++  +++W  + K  +  C  L  F R  +P  P++PL
Sbjct: 731 VLSRSWVWSGVVKLSKSSCTSLVHFVRALQPAPPEAPL 768


>01_06_0648 -
           30844289-30844341,30844536-30844648,30845435-30845484,
           30845572-30845642,30845725-30845797,30846744-30846841,
           30846936-30847002,30847150-30847230,30847312-30847479,
           30847563-30847730,30847813-30848109,30848205-30848426,
           30849287-30849325
          Length = 499

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 157 FVESMEPSRIDSIGNQAWVDWHIR--LQKLNQQAVLEASSMREELTKETLISCG 312
           +V  M    IDS+ N A+ +W I+  L+K+  + + E S   + L  E L S G
Sbjct: 161 YVPEMVEVLIDSVRNPAFFNWEIKEQLEKIKAE-IAEVSDNPQGLLLEALHSAG 213


>10_05_0013 +
           7986281-7986434,7986664-7986743,7987583-7987656,
           7988186-7988252
          Length = 124

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 398 HQIIPL-AYIWFCITKQPRW 454
           H+ IP  AY+W+C  +QP W
Sbjct: 26  HRCIPRRAYLWWCRCRQPPW 45


>03_05_0638 +
           26317630-26317971,26318058-26318594,26318954-26319722,
           26319802-26319871,26320103-26320268
          Length = 627

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 136 DAGELDLFVESMEPSRIDSIGNQAWVDWHIRLQKLNQQAVLEASSMREELTKETLIS 306
           D  E+D   +  EPS     G+ + VD  ++  K   Q ++E  S   EL+ +TL S
Sbjct: 168 DVNEIDDETDEDEPSAKRKRGDSSKVD-KLKKTKSGSQKMVEEMSKSNELSAQTLSS 223


>01_04_0124 +
           16359695-16359734,16360217-16360453,16361133-16362104,
           16362211-16362398,16362564-16363942,16364024-16365047,
           16365171-16365566,16367484-16367999,16368085-16368226,
           16369409-16369553,16371351-16371432,16371851-16371895,
           16372018-16372140
          Length = 1762

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 344 AFKCGKLKFIRKLLNWNQHQIIPLAYIWFCIT 439
           A + G L F+R+LL W+  +I+ +   + C++
Sbjct: 147 ASESGLLGFLRRLLIWHSEKILSVTVFYACLS 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,297,379
Number of Sequences: 37544
Number of extensions: 353649
Number of successful extensions: 724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)