Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29j12
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC199170-6|ABO33264.1|  325|Caenorhabditis elegans Hypothetical ...    33   0.24 
L16560-5|AAA27996.1|  443|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    30   1.7  
U97008-5|AAB52311.2|  338|Caenorhabditis elegans Serpentine rece...    29   2.9  
U41996-3|AAA83472.2|  362|Caenorhabditis elegans More of ms prot...    29   2.9  
AF013952-1|AAC47749.1|  362|Caenorhabditis elegans mom-2 protein.      29   2.9  
Z75547-4|CAA99900.1|  201|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81049-5|CAE17733.2|  197|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AC199170-6|ABO33264.1|  325|Caenorhabditis elegans Hypothetical
           protein T08D2.5 protein.
          Length = 325

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = -2

Query: 413 KVLFGAGSSLTICG*ILIFHT*M---HIAS*TNTGSFPQEIRVSLVSS-SRIEDASRTAC 246
           +++FGAGS+    G I I ++ +   H  S  NT +F   ++ S  SS S    +S   C
Sbjct: 240 QMIFGAGSTFYKNGKIRILYSCINFIHFQSLLNTSTFTSWLQSSSFSSASSSSTSSEQCC 299

Query: 245 WFNFWSLMCQS 213
            F F  L+CQ+
Sbjct: 300 TFIFIYLLCQN 310


>L16560-5|AAA27996.1|  443|Caenorhabditis elegans Hypothetical
           protein D2007.5 protein.
          Length = 443

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = +3

Query: 45  LYRKKYNTKTLN*VFRNFKNGRKRSTIKCTRCR*IGLIRRKYGTISY*QYWQSSMGRLAH 224
           LY KK + +T   ++R F+N       K  + R IG +  K+G IS   ++++SM     
Sbjct: 132 LYVKKQHLETFVIMYRVFENDISSDMGKGKKTRKIGELVSKFGNISLDLHYRTSM---HF 188

Query: 225 QTPKIKPTS 251
           + P+I P +
Sbjct: 189 EEPEIAPVT 197


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
            protein Y47D3B.7 protein.
          Length = 1113

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 416  AYIWFCITKQPRWDCWKLFCFTRTARPVSPKSP 514
            AY  + I    R DCW+LF +  T R ++  +P
Sbjct: 1034 AYNHYAIINGTRGDCWRLFVYELTCRMLNGANP 1066


>U97008-5|AAB52311.2|  338|Caenorhabditis elegans Serpentine
           receptor, class h protein231 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -3

Query: 241 LIFGV*CANLPMLDCQYCQYEMVPYFRRISPIHLHRV--HLIVDLFLPFLKFLNT*FKVL 68
           LI  + C    +L+C    Y       R +    HR+   LI+   + F+ FL     ++
Sbjct: 198 LIPTIECGTFLLLNCYNLIYTSSSGISRHTVKMQHRLVLALIIQSSITFILFLIPISMII 257

Query: 67  VLYFFRYKNAIYCN 26
           +  +FRY+N I+ N
Sbjct: 258 LFVYFRYQNQIFNN 271


>U41996-3|AAA83472.2|  362|Caenorhabditis elegans More of ms protein
           2 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 413 LAYIWFCITKQPRWDCWKLFCFTRTARPVSPKSPLICSN 529
           LA I+F +      D W L   T T+   S  SP++C N
Sbjct: 9   LAIIYFLVFAPKSADAWWLLSKTDTSSANSGSSPILCKN 47


>AF013952-1|AAC47749.1|  362|Caenorhabditis elegans mom-2 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 413 LAYIWFCITKQPRWDCWKLFCFTRTARPVSPKSPLICSN 529
           LA I+F +      D W L   T T+   S  SP++C N
Sbjct: 9   LAIIYFLVFAPKSADAWWLLSKTDTSSANSGSSPILCKN 47


>Z75547-4|CAA99900.1|  201|Caenorhabditis elegans Hypothetical
           protein R11D1.3 protein.
          Length = 201

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/21 (66%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = +2

Query: 2   SYGIAKAAITV-YCIFISKKV 61
           +YG+AKAAIT+ YC  I KKV
Sbjct: 147 TYGVAKAAITLTYCDGICKKV 167


>Z81049-5|CAE17733.2|  197|Caenorhabditis elegans Hypothetical
           protein C48D1.5 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 402 WCWFQFNNLRINFNFPHLNAYRFINQYGQFSTRN*SFFSKL 280
           W  F+  +L I + FP +N Y F+       ++N   F ++
Sbjct: 103 WDNFKQRHLEIPYEFPEVNGYIFVEDLSPICSKNGILFLRI 143


>U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical
           protein C23F12.2 protein.
          Length = 941

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 223 CANLPMLDCQYCQYEMVPYFRRISPIHLHRVHL 125
           C  +  L C  C + +V Y R  SPI +  +H+
Sbjct: 900 CEGVQNLICSACLFFLVKYTRHASPIIIRLIHV 932


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,418,440
Number of Sequences: 27780
Number of extensions: 328767
Number of successful extensions: 842
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)