Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29j09
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 31 0.37
01_06_1199 + 35355690-35355732,35355793-35355930,35356366-353563... 31 0.64
02_05_0076 + 25637752-25639062,25639221-25639297,25640962-256410... 30 1.1
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 29 2.0
03_05_0915 + 28755584-28756139,28756695-28756846,28756994-287569... 29 2.0
07_01_0983 + 8287866-8287871,8289353-8289583,8289647-8290408 28 3.4
04_04_1121 - 31041629-31041793,31041891-31042022,31042255-310424... 28 3.4
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543... 28 4.5
03_04_0125 - 17487746-17487847,17488025-17488555,17488834-174891... 28 4.5
03_02_0153 - 5961910-5962441,5962779-5963128,5963415-5963681,596... 28 4.5
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 27 6.0
03_02_0621 - 9923163-9923245,9924163-9924338,9924437-9924495,992... 27 6.0
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 27 7.9
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 31.5 bits (68), Expect = 0.37
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = +1
Query: 139 NEKNSTFSKEEESRVITENNETKKIVDFGELTSKFKGDSSKHVLRNLKSQSSKSVNKAKG 318
N++ ST ++ E ++ +K G L S GD + +V + + SS KG
Sbjct: 196 NQETSTSNQHEYESNPSDAEPKQKGTPEGLLVSTEGGDQASYVKSSTPTTSSFDSELQKG 255
Query: 319 GVLLKSSDQNMNLTDDDD 372
G L SSD N + D
Sbjct: 256 GNRLDSSDHRGNFSSTTD 273
>01_06_1199 +
35355690-35355732,35355793-35355930,35356366-35356389,
35356450-35356587,35356974-35357056,35358881-35358922,
35359151-35359231,35359319-35359414,35359530-35359736,
35359810-35359963,35360170-35360373,35361037-35361921,
35362025-35362071
Length = 713
Score = 30.7 bits (66), Expect = 0.64
Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Frame = +1
Query: 1 ELTFKHSSTTNSDCSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNST---FSKEE 171
E+ KH+++ SD GQ+ I + F+ + + + V + + S ++
Sbjct: 127 EIVDKHNTSNESDLVQGQVSIITGTPKAFQPSEFEYSMQSAVNTTRGDNRSADIIMQGDQ 186
Query: 172 ESRVITENNETKKIVDFG-ELTSKFKGDSSKHVLRNLKSQSSKSVNKAKGGVLLKSSDQN 348
NE + + ++ S D + + +L + +++ KG + SD+N
Sbjct: 187 NGDSDDSENEQNPVDPWSLDILSMAANDKEQTTMESLNNGPEQNIE--KGTNEIAESDEN 244
Query: 349 MNLTDDD 369
LT++D
Sbjct: 245 EELTEED 251
>02_05_0076 +
25637752-25639062,25639221-25639297,25640962-25641095,
25641178-25641242,25641431-25641482,25641912-25641994,
25642128-25642221,25642332-25642861
Length = 781
Score = 29.9 bits (64), Expect = 1.1
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Frame = +1
Query: 37 DCSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETK-KI 213
D S+ + K++D KK K++ I G+ F S+VI + +++ ++
Sbjct: 544 DISDNMLKHKKQIDLHIKKRKSS--QKKITGI-------QFVPGSSSKVIITSADSRIRV 594
Query: 214 VDFGELTSKFKGDSSKHVLRNLKSQSSKSVNKAKGGVLLKSSDQN----MNLTDDDDPYV 381
+D EL KFKG RN SQ S + + KG L+ +S+ + DD +P
Sbjct: 595 IDSFELVCKFKG------FRNTNSQIS-ACSAVKGRYLISASEDSHVYMWRCNDDSEPNT 647
Query: 382 K 384
K
Sbjct: 648 K 648
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 103 TVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKIVDFGELTSKFKGDS-SKHVLRNL 279
T T + I +N+ +K+ R +TE NE+K + S+ KG++ +H+ N
Sbjct: 550 TPTRPSTPASIDKLENAPTTKQRSVRTVTERNESKSGRPLIKKMSERKGNARPRHISSNA 609
Query: 280 KSQSSKSVNKA 312
+ S S N +
Sbjct: 610 QLDSPGSANSS 620
>03_05_0915 +
28755584-28756139,28756695-28756846,28756994-28756996,
28757587-28757690,28758033-28758121,28758682-28758825,
28759194-28759291,28759380-28759502,28760045-28760113,
28760206-28760406
Length = 512
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -3
Query: 149 FFSFLINPTILS*VTVFFNFLKNSSIFLFIQICPLLQSEFVVLECLNV 6
F SFLIN +++ V + +K+S + F +I P+ SEF+ C +
Sbjct: 377 FDSFLINASLVFMCEVLIDAIKHSFLAKFNEIKPVAYSEFLEDLCKQI 424
>07_01_0983 + 8287866-8287871,8289353-8289583,8289647-8290408
Length = 332
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +1
Query: 67 KKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRVITENNETKKIVDFGELTSKFK 246
KKM+E+FKK ++ L K + FSK+E ++ N+E FG++
Sbjct: 2 KKMNEYFKKNGGSI-------LQKVDNVKIFSKDELKKITKNNSEVLGQGGFGKVYKGTL 54
Query: 247 GDSS 258
GD++
Sbjct: 55 GDNT 58
>04_04_1121 -
31041629-31041793,31041891-31042022,31042255-31042425,
31042521-31042622,31042703-31042807,31043115-31043286,
31043916-31043980,31044179-31044502,31044729-31044846,
31044928-31045011,31045472-31045603,31045714-31046570,
31046735-31046849,31047371-31047481,31047763-31047824
Length = 904
Score = 28.3 bits (60), Expect = 3.4
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 169 EESRVITENNET-KKIVDFGELTSKFKGDSSKHVLRNLKSQSSKSVNKAKGGVLLKSSDQ 345
++S V++E E +K V E S GDSS + N +S+S S ++ L S Q
Sbjct: 189 KDSMVVSEKPEKPQKNVPVSENDSS-SGDSSDEEMANDQSESDDSSSEEASEELKIESKQ 247
Query: 346 NMNLTDDD 369
++TD D
Sbjct: 248 GKDMTDMD 255
>04_03_0535 - 16850704-16853001,16854055-16854115,16854228-16854323,
16854394-16854521,16855016-16855067,16855182-16855274,
16855473-16855590,16856456-16856609,16857512-16857643,
16859136-16859216,16859353-16859507,16860118-16860343,
16860423-16860507,16860593-16860689,16861785-16861949,
16862046-16862121,16863041-16863103,16863193-16863359,
16863495-16863669,16863743-16863835,16864694-16864810,
16865589-16865778,16866092-16866126
Length = 1618
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/37 (32%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Frame = +1
Query: 46 NGQICINKKMDEFFKKLKNTVTYDNIV-GLIKNEKNS 153
NG++ +K+ E K +NTVT+++++ G ++N+++S
Sbjct: 1258 NGKLEEGRKLFEQIKDERNTVTWNSMISGYVQNDQSS 1294
>03_04_0125 -
17487746-17487847,17488025-17488555,17488834-17489102,
17489161-17489257,17491060-17491161,17491235-17491367,
17491589-17491681,17491756-17491844,17493578-17493700,
17496908-17497004,17497440-17497639
Length = 611
Score = 27.9 bits (59), Expect = 4.5
Identities = 23/102 (22%), Positives = 41/102 (40%)
Frame = +1
Query: 4 LTFKHSSTTNSDCSNGQICINKKMDEFFKKLKNTVTYDNIVGLIKNEKNSTFSKEEESRV 183
LTF S T D IC K + + ++ + ++ V K E+ EEE V
Sbjct: 239 LTFSDSGITTGDI----ICYQKSLPQNWRIYSSVASFLQHVCDHKEEEWKRHILEEEIAV 294
Query: 184 ITENNETKKIVDFGELTSKFKGDSSKHVLRNLKSQSSKSVNK 309
+ +T ++ +T+ +K V LK + +V +
Sbjct: 295 LKRQADTDRLQKDESMTAIYKPHLCNEVCDQLKHERDNAVRQ 336
>03_02_0153 -
5961910-5962441,5962779-5963128,5963415-5963681,
5964149-5964379
Length = 459
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 55 ICINKKMDEFFKKLKNTVTYDN 120
IC N +EFFK+ N TYD+
Sbjct: 311 ICANHPSNEFFKQFPNCRTYDS 332
>05_01_0431 +
3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 161 EKVLFFSFLINPTILS*VTVFFNFLKNSSIFLFIQICPLL 42
++V + SF N L FFN K+S I + Q+C LL
Sbjct: 82 QRVDWSSFGANSDFLRQFLFFFNAKKDSDIAILCQVCNLL 121
>03_02_0621 -
9923163-9923245,9924163-9924338,9924437-9924495,
9924952-9924984,9925060-9925185
Length = 158
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 160 SKEEESRVITENNETKKIVDFGELTSKFKGDSSKHVLRNLKSQSSKSVNKAK 315
SK S+V + T K+ GE +K+KG + L+N S ++ +AK
Sbjct: 103 SKPVCSKVDIHSYPTFKVFYEGEEVAKYKGPRNVESLKNFVSDEAEKAGEAK 154
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 148 NSTFSKEEESRVITENNETKKIVDFGELTSKF-KGDSSKHVLRNLKSQSSKSV 303
+S+F KE+ +VI+ N+E ++ F + K SSK L + K K V
Sbjct: 258 SSSFHKEQGRKVISRNSENDRVASFHKQHDKRPTSRSSKDELPSQKKHIRKPV 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.129 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,452,437
Number of Sequences: 37544
Number of extensions: 150277
Number of successful extensions: 366
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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