Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29j04
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomy... 95 1e-20
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 28 1.0
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 28 1.3
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 27 2.3
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ... 27 2.3
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|... 27 3.1
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 26 5.4
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.1
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 25 7.1
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 25 7.1
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 9.4
>SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 133
Score = 94.7 bits (225), Expect = 1e-20
Identities = 40/97 (41%), Positives = 63/97 (64%)
Frame = +3
Query: 342 ETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMCAERSAV 521
E ++ L E K + +YCPYSNF+VGA +++++ + G N+EN++ +CAER A+
Sbjct: 4 EDIEKLFQEVKKSLQYSYCPYSNFAVGACVVSDDKNTYIYGANVENASYGNCICAERVAI 63
Query: 522 AKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLNEF 632
KAV GYTKF + +++ + T PCG+CRQ + EF
Sbjct: 64 TKAVSMGYTKFMAIGVMSAKGRVT-PCGICRQVIREF 99
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 52 IYQDNAETDSVNLYLDIF 105
+Y+DN TD++N YLD+F
Sbjct: 805 LYEDNELTDALNNYLDLF 822
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +3
Query: 447 SRMYAGCNIENSTLTPSMCAERSAVAKAVCDGYTKFKCVAIVAH 578
+++Y+G + S + P + +RS + +CD F+ ++ + H
Sbjct: 563 TKLYSGTGVIVSVVPPLIVVDRSVIPVDICDIRLTFQSMSAMGH 606
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 330 NSLDETVQNL-LMEAVKIRKRAYCPYSNFSVGAAILTEEDS 449
N+ DE + L L++ R A CP N + A++LT D+
Sbjct: 433 NTADEFTEQLNLLKNEVARLSAICPSPNSGINASVLTNADN 473
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 239 QLVADRTGNRAHQHDRD 289
QL+AD+ GN H H+RD
Sbjct: 246 QLMADKAGNVIHLHERD 262
>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -2
Query: 497 RWCQSGVLNVASGVHSRIFFGKYSGTNRKIGIRTI 393
+W V G ++ +F G+ TNR++ I+ I
Sbjct: 8 KWTYVKERKVGEGTYAVVFLGRQKETNRRVAIKKI 42
>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 632 ELVEGLPTYPAGRSEFSLMGYYSHTF 555
+LVEG P G S F +GY S F
Sbjct: 408 QLVEGSTVPPIGTSSFDYIGYSSEKF 433
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 5.4
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 71 KQI-QSIFISIYSCL-TKYVNLQILLHANRRLHVVISHNAKGTFNHETISNQRSFNCNQL 244
KQ+ Q F ++ S T++VN ++ +V +SHN N QR N N +
Sbjct: 442 KQVFQRAFFTVSSLFFTRFVNESLIPILRNDYYVYLSHNLLTVCNIIKAQFQRLKNANSI 501
Query: 245 VADRTGN 265
A + N
Sbjct: 502 PAKQVEN 508
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 569 YSHTFKFRVTVTDSLRNSRPLCAHRWCQSGVLNVASGVHSRI 444
+SH++K+ + + S+ A SG++++AS +HS I
Sbjct: 100 WSHSYKWWIVIQVSVITIVVTFASSVYSSGIIDIASELHSSI 141
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 330 NSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTL 488
NS+++ L+ E K+R Y + +L + SR Y ENS L
Sbjct: 273 NSIEDWDYELMFEVAKLRLHGMYKYPRNYTVSDVLFRKVSRQYWPYTSENSVL 325
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 303 MDNFQIVD-FNSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILT 437
M+ +I+D + +DE +++L++++K K Y P+S +LT
Sbjct: 7 METNEILDQLDKIDERNEDILLKSLKASKCTYKPWSREEFLRRLLT 52
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -2
Query: 383 PNFDSFHQQILNSLIQRIKVHDLKIIHCACVCLCRV 276
PNF+ F + I N+ ++ + D + A +C+C++
Sbjct: 500 PNFELFTRSIFNASLKNFNILDER--SQALLCMCQI 533
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,657
Number of Sequences: 5004
Number of extensions: 55063
Number of successful extensions: 163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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