Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29j04
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0473 - 29598704-29599642 52 5e-07
06_03_0739 + 24004629-24005219 41 7e-04
11_03_0032 - 9105130-9105286,9105321-9105384,9106355-9106487 30 1.4
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224 28 5.6
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 28 5.6
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325... 28 5.6
01_01_0426 + 3234987-3235935,3236744-3236782,3237044-3237409,324... 28 5.6
12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557... 27 9.7
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518... 27 9.7
>01_06_0473 - 29598704-29599642
Length = 312
Score = 51.6 bits (118), Expect = 5e-07
Identities = 41/105 (39%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Frame = +3
Query: 342 ETVQNLLMEAV-KIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIE--NSTLTPSMCAER 512
ETV++LL V +RA P S F VGA L R+YAG N+E L+ S+ AE+
Sbjct: 38 ETVEDLLPLLVPSAMRRARAPISRFPVGAVGLGAS-GRVYAGVNLEFRGLPLSHSVHAEQ 96
Query: 513 SAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLNEFCSSDG 647
V A G ++ + VA V+H PCG CRQ L E + G
Sbjct: 97 FLVVNAAAAGESELRAVA-VSHM-----PCGHCRQFLQEIRGAGG 135
>06_03_0739 + 24004629-24005219
Length = 196
Score = 41.1 bits (92), Expect = 7e-04
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +3
Query: 384 KRAYCPYSNFSVGAAILTEEDSRMYAGCNIE--NSTLTPSMCAERSAVAKAVCDGYTKFK 557
+RA P S F VGA L +YA N+E L+ S+ AE+ V A G +K
Sbjct: 2 RRARVPISRFPVGAVGLGMSGC-IYASVNLEFRGLPLSHSIHAEQFLVVNAAAVGKSKL- 59
Query: 558 CVAIVAHQREFTAPCGVCRQTLNEFCSSDG 647
C ++H PCG CRQ L E + G
Sbjct: 60 CAIAISHM-----PCGHCRQFLQEIRGAGG 84
>11_03_0032 - 9105130-9105286,9105321-9105384,9106355-9106487
Length = 117
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 381 RKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMCAERSA 518
R RA+ P+ N+ V +L SR Y CN++ L S A SA
Sbjct: 55 RMRAFVPFKNYIV-CHLLLNSQSRQYEECNLKTVVLQNSDNAGSSA 99
>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
Length = 787
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 301 VRAFVSVVLVRAVPSAVSDQLI-TVKRSLIRYCFMIESPFC 182
V + +++ + +A SD + T RSLI C E+PFC
Sbjct: 195 VARVIKRIMLSDIAAACSDSMCDTTGRSLILVCLGCENPFC 235
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/86 (22%), Positives = 39/86 (45%)
Frame = -3
Query: 346 VSSRELKSTI*KLSIVRAFVSVVLVRAVPSAVSDQLITVKRSLIRYCFMIESPFCVVTYD 167
V S E K+ ++FV V +A + +IT++ + I F+ + PF + +
Sbjct: 390 VDSPEGKNLFVSSVFHKSFVEVNEEGTEAAAATAAVITLRSAPIAEDFVADHPFLFLIQE 449
Query: 166 DMQSSIGMQQYLQIDIFGQTRIYRDK 89
DM + ++ ++ GQ + D+
Sbjct: 450 DMTGVVLFVGHVAAEVLGQVNSWVDR 475
>01_01_0429 +
3254291-3254435,3254902-3255210,3255286-3256747,
3256950-3257577
Length = 847
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 95 SIYSCLTKYVNLQILLHANRRLHVVISHNAKGTFNHETI 211
S+ +CLT VNL +L + + H V+ +N++ N ++I
Sbjct: 295 SVPACLTGSVNLSVLKLRDNQFHGVLPNNSREGCNLQSI 333
>01_01_0426 +
3234987-3235935,3236744-3236782,3237044-3237409,
3240871-3242315
Length = 932
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 95 SIYSCLTKYVNLQILLHANRRLHVVISHNAKGTFNHETI 211
S+ +CLT VNL +L + + H V+ +N++ N ++I
Sbjct: 723 SVPACLTGSVNLSVLKLRDNQFHGVLPNNSREGCNLQSI 761
>12_02_1169 -
26655170-26655332,26655429-26655504,26655603-26655715,
26655808-26655913,26656001-26656235,26656415-26656573,
26657279-26657377,26657472-26657568,26657650-26657768,
26657860-26658000,26658100-26658184,26658287-26658488,
26659274-26659379
Length = 566
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 330 NSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDS 449
++L E Q+ +E K RK A C S+ VG +LT S
Sbjct: 405 DTLIEKKQDTSVEESKRRKAAVCSISSVCVGVVVLTTSAS 444
>08_02_0110 +
12650328-12650552,12650827-12651423,12651480-12651857,
12651997-12652218,12652407-12652483,12652553-12652631,
12652920-12653105
Length = 587
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -2
Query: 437 GKYSGTNRKIGIRTIGPFPNFDSFHQQILNSLIQRIKVHDLKIIHCAC 294
G+ + +I +R P P F +++ ++ IQ I+ IH C
Sbjct: 510 GQCKNSRERISVRNKWPLPKFPKSERELNDTSIQNIQADMCYFIHREC 557
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,006,635
Number of Sequences: 37544
Number of extensions: 342474
Number of successful extensions: 847
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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