Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29j04
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61949-3|AAB03151.1|  166|Caenorhabditis elegans Cytidine deamin...   102   3e-22
U64861-1|AAB04993.1|  158|Caenorhabditis elegans Cytidine deamin...    88   6e-18
AC006651-2|AAP82649.1|   72|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    28   6.6  
AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc ...    28   6.6  
Z93389-4|CAE17923.1|  324|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U61949-3|AAB03151.1|  166|Caenorhabditis elegans Cytidine deaminase
           protein 2 protein.
          Length = 166

 Score =  102 bits (244), Expect = 3e-22
 Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 2/103 (1%)
 Frame = +3

Query: 330 NSLDETVQN--LLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMC 503
           NSL + + +  L+  A    KRA+CPYS F VGAA+LTE    +  GCN+EN++   ++C
Sbjct: 4   NSLPQDISDVELVHLARAAMKRAHCPYSKFPVGAALLTES-GEIVQGCNVENASYGGTIC 62

Query: 504 AERSAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLNEF 632
           AERSA+  AV  GYTKF+ +A+V    E  +PCG+CRQ L EF
Sbjct: 63  AERSAIVSAVSQGYTKFRAIAVVTELSEPASPCGLCRQFLVEF 105


>U64861-1|AAB04993.1|  158|Caenorhabditis elegans Cytidine deaminase
           protein 1 protein.
          Length = 158

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 42/100 (42%), Positives = 61/100 (61%)
 Frame = +3

Query: 333 SLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENSTLTPSMCAER 512
           +L E  Q L+ +A+   + AYC YSNF VGAA++ + D  +  G N EN++   ++CAER
Sbjct: 7   NLTEFEQQLVDKAIGAMENAYCKYSNFKVGAALVCD-DGEIIIGANHENASYGATICAER 65

Query: 513 SAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLNEF 632
           SA+  A+  G+ KFK + +        +PCGVCRQ L EF
Sbjct: 66  SAIVTALTKGHRKFKYIVVATELEAPCSPCGVCRQVLIEF 105


>AC006651-2|AAP82649.1|   72|Caenorhabditis elegans Hypothetical
           protein H06I04.7 protein.
          Length = 72

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 429 ILTEEDSRMYAGCNIENSTLTPSMCAERSAVAKAVCDGYTKFKCV 563
           I  EE+ + Y      N++   + C E+   +   C+GY K  CV
Sbjct: 18  IAPEENHKTYCEVLTSNNSNCTAYCKEKPECSWGRCEGYFKTNCV 62


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 330 NSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENS 482
           N+LD  +Q ++  A++IRK  +  Y        ++ EED  ++   N+E++
Sbjct: 362 NALDRRIQYMIETAMQIRKDKFAAYPAVIEDLDLIEEEDQIIHT-LNLEDA 411


>Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical
           protein M04B2.1 protein.
          Length = 870

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +3

Query: 495 SMCAERSAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLN 626
           +MC E     + + D Y +   V   + ++E   PC +C +  N
Sbjct: 453 TMCKETDTSEQRMKDHYFETHLVIAKSEEKESKYPCAICEEDFN 496


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 330 NSLDETVQNLLMEAVKIRKRAYCPYSNFSVGAAILTEEDSRMYAGCNIENS 482
           N+LD  +Q ++  A++IRK  +  Y        ++ EED  ++   N+E++
Sbjct: 362 NALDRRIQYMIETAMQIRKDKFAAYPAVIEDLDLIEEEDQIIHT-LNLEDA 411


>AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc
           finger protein protein.
          Length = 870

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +3

Query: 495 SMCAERSAVAKAVCDGYTKFKCVAIVAHQREFTAPCGVCRQTLN 626
           +MC E     + + D Y +   V   + ++E   PC +C +  N
Sbjct: 453 TMCKETDTSEQRMKDHYFETHLVIAKSEEKESKYPCAICEEDFN 496


>Z93389-4|CAE17923.1|  324|Caenorhabditis elegans Hypothetical
           protein T13F3.7 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 289 VSVVLVRAVPSAVSDQLITVKRSLIRYCFMIESPFCVVTY 170
           +++ L+  VP +V  +LIT   +L  +CF+I +    V +
Sbjct: 231 ITLNLIATVPPSVQLKLITDAHTLTAFCFVIHTATAYVIF 270


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
 Frame = +3

Query: 396 CPYSNFSVGAAILTEEDSR--MYAGCNIENSTLTPSMCAERSAVAKAVCDGYTKFKCVAI 569
           C    F+V  A+      R    A C    S      C + S      C   T   C + 
Sbjct: 3   CVIILFAVALAVAQASSIRETRQASCGCAQSVQPTCSCQQASQQYSCSCQPSTPCSCASS 62

Query: 570 VAHQREFTAPCGVCRQTLNEFCSSD 644
             +Q + +     C+Q+ ++ C S+
Sbjct: 63  QQYQLQTSQCMPACQQSCSQQCQSN 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,192,020
Number of Sequences: 27780
Number of extensions: 322989
Number of successful extensions: 949
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)