Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29j03
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 29 0.66
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 28 1.5
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 27 2.7
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 27 2.7
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 27 3.5
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc... 26 6.2
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 6.2
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 26 6.2
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 25 8.2
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 29.1 bits (62), Expect = 0.66
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +1
Query: 184 WTNGYAASSIDT--HVLQGIKCRQEKPTDLRYQTQNTFNVGNIINKCSENKRYKSNNVMK 357
W G S++ T H ++ ++C +K + +F V ++ KC + R +S
Sbjct: 54 WKQGLCDSNVPTQEHAVKSLRCFLDKSRQKGVNSAKSFVVAPLLEKCLPSPR-QSIRDAS 112
Query: 358 HKKLSSKMKASSFSY 402
H+ L K+ + Y
Sbjct: 113 HQALLILAKSDALDY 127
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Frame = +1
Query: 250 EKPTDLRYQTQNTFNVGNIINKCSENK------RYKSNNVMKHKKLSSKMKASSFS 399
E PT L Q +N+F+ N+ + E++ R N +M K+ + K SS S
Sbjct: 56 ESPTSLNRQHRNSFSFNNVSSPSLEDERLINFPRVNPNRLMTSKRPNELFKTSSMS 111
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 2.7
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Frame = +1
Query: 154 NTENTYIDNHWTNGYAASSIDTHVLQGIKCRQEKPTDLRYQTQNTFNVG-NIINKC---- 318
N EN +N I L C+ KPT+L QT + + N+++ C
Sbjct: 21 NKENCTDAVSSSNKEGPKQISEDQLSNFLCKILKPTNLTPQTYSLESKSSNLVSDCELKI 80
Query: 319 -SENKRYKSN-NVMKHKKLSSKM-------KASSFSYRAPKCSMRIAELAI 444
S + Y S NV H SK K S +APKCS+ + L I
Sbjct: 81 SSVYQSYSSTFNVSNHVPSISKTVNIRETSKHLKHSTKAPKCSLPTSALEI 131
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 581 LKLRIASGIRTIGYSSITYFLKRSTAKMDSL 489
L L + G+ + YS+ + LKR TA MD L
Sbjct: 218 LSLPVQFGVGRVYYSAAYHALKRGTANMDVL 248
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 355 KHKKLSSKMKASSFSYRAPKCSMRIAELAIPAKRRCLETWRENYDKLS 498
K K +SS + SSFS R SM++ E + A L+ Y KLS
Sbjct: 643 KSKNISSS-RLSSFSKRLAIASMQLPEHSASADLALLKKLLSRYSKLS 689
>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 451 KRRCLETWRENYDKLSIFAVERLRKYVMDEY 543
KRR WRE+++K + +E ++KY E+
Sbjct: 125 KRRYAHEWRESWEKAD-YIMEAMKKYPHAEW 154
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 6.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +1
Query: 142 GDSYNTENTYIDNHWTNGY 198
G +Y N Y D W NG+
Sbjct: 137 GKTYGNINVYFDEEWLNGF 155
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 366 FLVLHYIITFISFVFRTFVYYITNVESVLSLIPQVCRFFLSTFNSL 229
F+ L+ ++TFI +F TF+ + E VLS F+S ++L
Sbjct: 431 FIFLYLMLTFIGIIFSTFM-TSEDAELVLSYDLMSKSLFISVVSTL 475
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 506 RWNV*GNM*WTSIQ*CVSQMRFVV 577
RWN N TS C+SQ RFVV
Sbjct: 348 RWNSIANKLGTSPAACMSQWRFVV 371
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,417
Number of Sequences: 5004
Number of extensions: 63385
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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