Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29j03
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0074 - 561304-562131,562219-562425,563034-563084,563310-56...    32   0.52 
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092...    31   0.91 
04_04_0392 + 24891478-24891612,24891875-24893092                       28   6.4  
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272...    28   6.4  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    28   8.5  

>01_01_0074 -
           561304-562131,562219-562425,563034-563084,563310-563408,
           564476-564622,564750-564851,565713-565928,566061-566192,
           566249-566310,567618-567746,568426-568567,568735-568830,
           568924-569000,569070-569148,569229-569297,569589-569703,
           570614-570777,570847-571002
          Length = 956

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +1

Query: 262 DLRYQTQNTFNVGNIINKCSENKRYKSNNVMKHKKLSSKMKASSFSYRAPKCSMRIA-EL 438
           DL  +  +T +    IN+CSE     +N+++  +  S   K ++++   P+ ++++   L
Sbjct: 267 DLYIRELDTLSFELSINRCSEKLANLANDILLKESASEDQKTNTWNQTGPQNNLKLQHSL 326

Query: 439 AIPAK 453
           A+PA+
Sbjct: 327 ALPAQ 331


>01_01_1234 -
           10007446-10007940,10008030-10008125,10008980-10009253,
           10009381-10009682,10010078-10010123,10010319-10010368,
           10011124-10011268,10012051-10012229,10012327-10012485,
           10012636-10012887,10012972-10013097,10013197-10013525,
           10014183-10014252
          Length = 840

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +1

Query: 130 DYNFGDSYNTENTYIDNHWTNGYAASSIDT 219
           D    D  NT   Y DNH +NG    S DT
Sbjct: 490 DSRLSDDLNTTTVYSDNHGSNGGGTQSFDT 519


>04_04_0392 + 24891478-24891612,24891875-24893092
          Length = 450

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 610 GKTSSTNWRA*NYESHLGYALLDTRPS 530
           GK  S++ R+  YE+ LGY++ D RP+
Sbjct: 6   GKKKSSSSRSLMYEAPLGYSIEDVRPA 32


>02_05_0259 -
           27226378-27226398,27226643-27226813,27227063-27227284,
           27227508-27227668,27227933-27227996,27228002-27228194,
           27228499-27228587,27228668-27228852,27229671-27229779,
           27229880-27229936,27230023-27230175
          Length = 474

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 511 ERLRKYVMDEYPIVRIPDAIRSFKHASSLKRSYR-RKHCNKTKPIKNS 651
           +R R+ V  EY   RIP  +  FK  S ++  YR  ++C +T+ + NS
Sbjct: 406 KRHRRDVRSEYCKCRIPQIVPCFKGPSVIEFLYRSARYCTRTQ-VHNS 452


>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 307 INKCSENKRYKSNNVMKHKKLSSKMKASSFSYRAPKCS 420
           ++KCS+NK   ++   ++K L     + S S    KCS
Sbjct: 186 VSKCSQNKSLDASKCSQNKSLDGSKCSQSKSLDGSKCS 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,174,222
Number of Sequences: 37544
Number of extensions: 338611
Number of successful extensions: 878
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)