Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29j02
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 85 6e-18
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 28 1.3
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 27 2.3
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 26 4.0
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch... 26 5.3
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 25 7.0
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 7.0
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 25 7.0
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 7.0
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.3
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 25 9.3
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 9.3
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 85.4 bits (202), Expect = 6e-18
Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 1/188 (0%)
Frame = +3
Query: 81 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 260
LSD VQ ++ M++FI+Q F +EK ++V++Q I
Sbjct: 3 LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLK 62
Query: 261 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 440
I SN+LN++RL++L ++ + ++ K+L + + Y++ + LIVQ
Sbjct: 63 RASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQ 122
Query: 441 ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIKK-DVVLKVDTENFLSPDTCGGI 617
A+ L EP + RQ D +V++ + KA + K+K D L +T++FL+ GG+
Sbjct: 123 AMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLNDSVLGGV 182
Query: 618 ELVAARGR 641
LV G+
Sbjct: 183 VLVGLGGK 190
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 609 HRCRATKSS-QCRLSTQRPS*SYSCSLVELFRAGTPPEPCR 490
H R +SS + RLS + S++C + G P PCR
Sbjct: 77 HTSRYFRSSPKIRLSLRHVEKSWACKICTFINVGDPINPCR 117
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 339 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 464
D N L+EA+KRLA +P D E+ +T + F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 26.2 bits (55), Expect = 4.0
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Frame = +3
Query: 357 LDEARKRLAEVPKDTK-LYSELLVTLIVQALFQL---MEPTVTIRVR-----QTDKALVE 509
++EA K KD K L +L T+ + + +E T+TI V DK E
Sbjct: 745 VEEAEKDYQPSEKDDKSLIGGILSTVEMTQSTDVNDEIENTLTIPVEVEHSDNIDKGSEE 804
Query: 510 SLLGKAQQDYKNKIKKDVVLKVDTENFLSPDTC 608
+ LGK D N + DV+ V E + D C
Sbjct: 805 NDLGKEAVDEANNNQNDVLESVVVEQSTTTDDC 837
>SPBC14C8.04 |||acetolactate synthase regulatory
unit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 5 RVINFLALYRPFFVLVVLKISSSHGAQRCRCSE-TDQAHD 121
RV NFL+L RP+ VL + +S + +E T++A D
Sbjct: 238 RVDNFLSLLRPYGVLEACRTGTSAMTRAPHSNEVTEEAED 277
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 473 HPRPSNRQGSGGVPARKSSTRLQE*DQEGRCVESRH*ELFVARHLWWYRA 622
H RP+N P+R ST E + EG+ + + FV+ W A
Sbjct: 306 HIRPNNEVAPSSAPSRAPSTTSVESNTEGKESDIQTGSSFVSYFKEWRHA 355
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 470 DSGFHELEESLHNKCDQQL*VQF-GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHV 294
+S F +EESL K + F + + S ++ I+ I Y I THF S+++H+
Sbjct: 241 ESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVERVIECIRYSILTHFYGNALSIIEHL 300
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 351 YVRDLHALSVPSDEL 307
+V DLHAL+VP D L
Sbjct: 56 FVADLHALTVPQDPL 70
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +3
Query: 429 LIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIKKDVVLKVDTENFL 593
L+ +AL ++M+ R ++ + L+E+ L +DYK+ +KK + + +N L
Sbjct: 396 LVEEALTKVMKEKY--REKENNLELLETNLKTHHKDYKHALKKRITALEEEKNRL 448
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 80 RHGCCLFLTPLTRKTADIE 24
RHGCC+ L R DI+
Sbjct: 619 RHGCCILQRCLDRTNGDIQ 637
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 25.0 bits (52), Expect = 9.3
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 490 PTRLWWSPCSEKL 528
P+ +WWSP S+K+
Sbjct: 228 PSTIWWSPDSDKI 240
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 297 MLNQARLKVL-KVREDHVRNVLDEARKRLAEVPKDTK 404
M +QARL+ L K+R+ + ++ +K LAE+ +D K
Sbjct: 92 MQDQARLRDLQKIRQQKAEDA-EQRKKILAEIERDKK 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,413
Number of Sequences: 5004
Number of extensions: 41155
Number of successful extensions: 136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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