Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29j02
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080...    96   2e-20
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891...    89   3e-18
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670...    82   4e-16
09_02_0115 + 4413714-4414475                                           32   0.45 
04_03_0839 + 20220909-20222471                                         29   2.4  
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122...    29   3.1  
12_02_0312 + 17395716-17398112                                         29   4.1  
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100...    28   5.5  
03_05_0331 - 23233883-23233972,23234099-23234164,23234300-232343...    27   9.6  

>01_06_0134 +
           26805329-26805430,26807130-26807230,26807876-26808032,
           26808386-26808582,26809188-26809287,26809501-26809536
          Length = 230

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 1/174 (0%)
 Frame = +3

Query: 81  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 260
           ++DADV KQI+ M+ FI Q                FNIEK +LV+ ++ KI         
Sbjct: 1   MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 261 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 440
                  I+ S  LN +R+KVL+ ++D V ++ ++A K+L  V  +   Y  LL  L+VQ
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120

Query: 441 ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIK-KDVVLKVDTENFLSP 599
            L +L EP V +R R+ D   VES+L  A+ +Y +K +     + VD + +L P
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVESVLHSAKNEYASKAEVHHPEILVDHDVYLPP 174


>05_05_0231 +
           23488588-23488689,23488775-23488875,23489012-23489168,
           23489365-23489594,23489696-23489795,23489878-23489916
          Length = 242

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 12/185 (6%)
 Frame = +3

Query: 81  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 260
           ++DADV KQI+ M+ FI Q                FNIEK +LV+ ++ +I         
Sbjct: 1   MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60

Query: 261 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV- 437
                  I+ S  LN AR+KVL+ ++  V  + ++A K L  V KD   Y ++L  LIV 
Sbjct: 61  QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120

Query: 438 ----------QALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIKKDV-VLKVDTE 584
                     Q+L +L EP+V +R R+ D+  VES+L  A+++Y  K K ++  + +D +
Sbjct: 121 RKDSEIIDQIQSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNLPKILIDGK 180

Query: 585 NFLSP 599
            +L P
Sbjct: 181 VYLPP 185


>01_01_0858 -
           6699126-6699128,6699219-6699318,6700052-6700278,
           6701032-6701188,6701422-6701522,6702147-6702251
          Length = 230

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 11/184 (5%)
 Frame = +3

Query: 81  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 260
           ++D DV +Q+K M  FI Q                F IEK +LV+ ++ +I         
Sbjct: 2   MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61

Query: 261 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 440
                  I+ S  LN +RL+VL+ ++D   ++L+ A K L  + +D  +Y  LL   IVQ
Sbjct: 62  QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121

Query: 441 ----------ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIK-KDVVLKVDTEN 587
                     +L +L EP V +R R+ D+ LVES+L  A+ +Y +K       + VD   
Sbjct: 122 DKLTKKNPEQSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNV 181

Query: 588 FLSP 599
           +L P
Sbjct: 182 YLPP 185


>09_02_0115 + 4413714-4414475
          Length = 253

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 410 LRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 508
           LR   H+  + SLP    H HHPRP   +GS G
Sbjct: 20  LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52


>04_03_0839 + 20220909-20222471
          Length = 520

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 642 YVPWLQPARYHHRCRATKSSQCRLSTQRPS*SYSCSLVELFRAGTPPEP 496
           Y+P+L+P  +    +A    + ++ T  P  +   ++V   RAG+PP+P
Sbjct: 231 YLPFLRPFLWRQHRQAVALRREQIDTVLPLINRRRAIVRGMRAGSPPDP 279


>10_08_0762 -
           20410681-20411834,20411999-20412098,20412200-20412298,
           20412563-20414133,20415080-20415128
          Length = 990

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +3

Query: 309 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 443
           +RL++LK R+D++ N LD+A K+  E   D   + E  V   +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869


>12_02_0312 + 17395716-17398112
          Length = 798

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 282 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 425
           ++ +N+ N   L VLK+  D + + L      L+  PKD +++ ELL+
Sbjct: 383 VKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430


>03_06_0108 +
           31708713-31709079,31709258-31709822,31709933-31710015,
           31710231-31710319,31710486-31710559,31710654-31710704,
           31710807-31710883,31711454-31712031,31712388-31712555,
           31713364-31713417,31713456-31713467,31713554-31713715
          Length = 759

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 428 TYCAGSLPAHGTHCHHPRPSNRQGSGG 508
           TYCAG +   G H HH    ++Q  GG
Sbjct: 34  TYCAGGVDDVGHHHHHHVHQHQQQHGG 60


>03_05_0331 -
           23233883-23233972,23234099-23234164,23234300-23234365,
           23234451-23234675,23234794-23235279
          Length = 310

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 527 SFSEQGLHQSLVGLTDADGDSGFHELEESLHNKCD 423
           S  EQG  Q +  + + +GD GF +L +S  N  D
Sbjct: 107 SIQEQGAAQFMDAILNRNGDPGFDDLADSSVNLLD 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,279,552
Number of Sequences: 37544
Number of extensions: 325734
Number of successful extensions: 965
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)