Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29i22
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    28   1.0  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    27   2.4  
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    27   3.2  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   5.5  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    26   5.5  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   7.3  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    25   7.3  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   7.3  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    25   7.3  
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.7  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   9.7  
SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyc...    25   9.7  
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   9.7  

>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 146 MYFRNMDSVEKNHKIKQEFVMELFLDTESVSIVDRLAAATANVINENHQ 292
           ++ +  D ++K H I+++   E+ L  E + ++  L A      NEN Q
Sbjct: 5   IFIQLQDQIDKEHSIREKLTAEVDLLDEKLRVLQLLLANCEQSRNENLQ 53


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 7/34 (20%), Positives = 21/34 (61%)
 Frame = +2

Query: 353 VQDCHSGVPVAHRIKGFYEETIRKFGNNEYIERF 454
           + +CHS +P+  ++K    + + K+ +++ ++ F
Sbjct: 55  IHNCHSKIPIVKKLKTIDLDKVVKYADDQKVDSF 88


>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +2

Query: 227 ESVSIVDRLAAATANVINENHQNLTKFNDLMKTEYYQLSQMMVQDCHSGVP-VAHRIKGF 403
           E  +I        A+  N + Q +TKF+D  K    Q+S   ++    GVP  AHRI G 
Sbjct: 73  EEDTIGSNALTVRADSENPSSQVITKFSDPNKKIAGQVSMQSLEKI-KGVPEAAHRIAGE 131

Query: 404 YEETIRK 424
            + ++ K
Sbjct: 132 SQASLVK 138


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 325 CFHKIIKFGQILMVFVYHICCSSSQSIDNRNTFG 224
           C   I +F  +      H CCS+ ++  N N FG
Sbjct: 85  CSTPICEFNAVSNSQANHPCCSNCRAFINSNAFG 118


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 389 RIKGFYEETIRKFGN 433
           ++ GFY+E +RK+GN
Sbjct: 125 QVYGFYDECLRKYGN 139


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 368 SGVPVAHRIKGFYEETIRKFGNNEYIERFKMKRSTVQALIAFL 496
           +G+ VA + K  ++  I +F N   I R+       +ALIAFL
Sbjct: 429 AGIFVADKFKNHHKYDIDEFYNPSGIYRYNKLGLNWRALIAFL 471


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 425 FGNNEYIERFKMKRSTVQALIAFLKPYLKPGNVP 526
           F   EYIE+ + K+    A  A  KP   P N P
Sbjct: 58  FVTPEYIEKQRQKKLEKMAKKAARKPIAPPSNAP 91


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 515 GNVPLDKKVHVFLWFMVNDSSYSDIGRLFGLHKSSVSYIFH 637
           GN+ +   +  FLW  V+  +Y  I      H  ++SY FH
Sbjct: 316 GNMGVIGSLRSFLWVPVSQYAYRAISTKALRHVLNLSYDFH 356


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 491 FLKPYLKPGNVPLDKKVHVFLWFMVNDS-SYSDIGRLFGLHKSSVSYIFHEIA 646
           F++PY++     LD+  +  +W ++ND+ S          H++ V ++  E A
Sbjct: 380 FIQPYIRLSAAYLDENDNEKMWKVLNDAESVDKTDSDLYYHRAQVRFVSGEFA 432


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 434 NEYIERFKMKRSTVQALIAFLKPYLKPGNVPLDKKVHVFLWFM-VNDSSYSDI 589
           NEY+E+ K    T   +  FL  +  P  +  + K  ++ WF  + D S   I
Sbjct: 210 NEYLEKIKTHYKTWLRIHTFLTLFPVPSVLSSNLKKQMYGWFEDLRDESLKSI 262


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 272 VINENHQNLTKFNDLMKTEYYQLSQMMVQDCHSGVPV 382
           ++ ++H+   K  D++ T  YQL   +  +   GVP+
Sbjct: 36  IVVKHHEEFLKVCDIISTFTYQLDASIYDEKVEGVPL 72


>SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 164 DSVEKNHKIKQEFVMELFLDTESVSIVDRLAAATANVINENHQNLTKF 307
           +S+ ++ K+K  FV   F+    +  V    A+   +  ENH    KF
Sbjct: 23  ESLSRSEKLKYVFVRNPFIPLGCLMTVGTFLASGYYIRRENHLMANKF 70


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +2

Query: 149 YFRNMDSVEKNHKIKQEFVMELFLDTESVSIV 244
           YFR +DS++  H  + E ++  ++++ S + +
Sbjct: 90  YFRFLDSIDSGHNERNEALLYTYIESLSSTYI 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,094
Number of Sequences: 5004
Number of extensions: 57334
Number of successful extensions: 167
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)