Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29i22
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0613 + 18953761-18953932,18954672-18954799,18954885-189549...    29   4.3  
12_01_0487 - 3860618-3860852,3860964-3861121,3861266-3861805           28   5.7  

>09_04_0613 +
           18953761-18953932,18954672-18954799,18954885-18954956,
           18955033-18955146,18955547-18955615,18955691-18955747,
           18956262-18956315,18956387-18956449,18956543-18956605,
           18956803-18956967,18957111-18957266,18957315-18957416
          Length = 404

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
 Frame = +2

Query: 326 EYYQLSQMMVQDCHSGVPVAHRIKGFYEETIRKFGNNEYIERF-KMKRSTVQALIAFLKP 502
           E YQ S+ +V   H  V  AH+I   Y +  +K  +  YI++  K  +  V+ +  +LKP
Sbjct: 294 ELYQASKDVVLP-H--VVKAHKIADPYFQEAKKV-SKPYIDQVAKATKPHVEKIRIYLKP 349

Query: 503 YLKPGNVPLDKKVHVFLWFMVNDSSYSDIGRLFGLH 610
           Y K       + VH++  F+   ++Y    +L GLH
Sbjct: 350 YTK-------RAVHIYGNFLEKATAYHQ--QLIGLH 376


>12_01_0487 - 3860618-3860852,3860964-3861121,3861266-3861805
          Length = 310

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +2

Query: 224 TESVSIVDRLAAATANVINENHQNLTKFNDLMKTEYYQLSQMMVQDCHSGVPVAHRIKGF 403
           T+  +++   AA TA+ I   +  +   + L+     +    +  +C S V  A R K F
Sbjct: 186 TKGKNLIISSAAHTASEIRGPYDAINLSSYLLGLSTQRAKAALSVNCRSLVSKALRKKHF 245

Query: 404 YEETIR 421
           Y+ETIR
Sbjct: 246 YKETIR 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,945,812
Number of Sequences: 37544
Number of extensions: 300765
Number of successful extensions: 591
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)