Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29i22
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125463-2|AAD12867.2| 167|Caenorhabditis elegans Hypothetical ... 31 0.55
Z96047-2|CAB09411.1| 566|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z68752-5|CAA92984.1| 199|Caenorhabditis elegans Hypothetical pr... 28 6.8
X74027-1|CAA52188.1| 566|Caenorhabditis elegans lamin protein. 28 6.8
Z99282-2|CAB16533.1| 613|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z83129-12|CAB05645.1| 613|Caenorhabditis elegans Hypothetical p... 27 8.9
AL033514-29|CAA22090.1| 333|Caenorhabditis elegans Hypothetical... 27 8.9
AB070573-1|BAB63947.1| 294|Caenorhabditis elegans Ser/Thr prote... 27 8.9
>AF125463-2|AAD12867.2| 167|Caenorhabditis elegans Hypothetical
protein Y49F6C.7 protein.
Length = 167
Score = 31.5 bits (68), Expect = 0.55
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 13/134 (9%)
Frame = +2
Query: 281 ENHQNLTKFNDLMKTEYYQL-SQMMVQ-DCH-SGVPVAHRIKGFYEETIRKFGNNEYIER 451
E HQNL + +T +L +Q+ VQ D + + R + +R+ N IE
Sbjct: 5 EEHQNLEENYQPARTPRNELVAQIQVQLDINRQEIRAREREQARLLRDLREMDNRIRIEM 64
Query: 452 FKMKRSTVQ-----ALIAFLKPYLKPGNVPLDKKVHVFLWFMVNDSS-----YSDIGRLF 601
++ ++ AL Y PG V + H ++F VND + LF
Sbjct: 65 MNLRARVLEENPLLALSLLFSHYRPPGRVHRAQTTHAIIFFSVNDGDRLRVIHEGAETLF 124
Query: 602 GLHKSSVSYIFHEI 643
+H S S+ F +
Sbjct: 125 PVHFRSASFHFENL 138
>Z96047-2|CAB09411.1| 566|Caenorhabditis elegans Hypothetical
protein DY3.2 protein.
Length = 566
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/106 (19%), Positives = 40/106 (37%)
Frame = +2
Query: 161 MDSVEKNHKIKQEFVMELFLDTESVSIVDRLAAATANVINENHQNLTKFNDLMKTEYYQL 340
++ V ++ + D + D++ A N HQN T F D K +
Sbjct: 229 LEEVRHKRQVDMTTYAKQINDEYQSKLQDQIEEMRAQFKNNLHQNKTAFEDAYKNKLNAA 288
Query: 341 SQMMVQDCHSGVPVAHRIKGFYEETIRKFGNNEYIERFKMKRSTVQ 478
+ + + + R++ ET GN IER + + T++
Sbjct: 289 RERQEEAVSEAIHLRARVRDL--ET-SSSGNASLIERLRSELDTLK 331
>Z68752-5|CAA92984.1| 199|Caenorhabditis elegans Hypothetical
protein T12G3.5 protein.
Length = 199
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Frame = +2
Query: 257 AATANVINENHQNLTKFNDLMKTEYYQLSQM----MVQDCHSGVPVA---HRIKGFYEET 415
++ V+++ ++ K+ND T Y + + DC VPVA ++++ + +
Sbjct: 25 SSVPRVVDDREKSSAKYNDAGYTFRYHQQGVDPLPRIPDCK--VPVARPAYKVRDQWSDE 82
Query: 416 IRKFGNNEYIE 448
+FG N+YI+
Sbjct: 83 AARFGQNDYID 93
>X74027-1|CAA52188.1| 566|Caenorhabditis elegans lamin protein.
Length = 566
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/106 (19%), Positives = 40/106 (37%)
Frame = +2
Query: 161 MDSVEKNHKIKQEFVMELFLDTESVSIVDRLAAATANVINENHQNLTKFNDLMKTEYYQL 340
++ V ++ + D + D++ A N HQN T F D K +
Sbjct: 229 LEEVRHKRQVDMTTYAKQINDEYQSKLQDQIEEMRAQFKNNLHQNKTAFEDAYKNKLNAA 288
Query: 341 SQMMVQDCHSGVPVAHRIKGFYEETIRKFGNNEYIERFKMKRSTVQ 478
+ + + + R++ ET GN IER + + T++
Sbjct: 289 RERQEEAVSEAIHLRARVRDL--ET-SSSGNASLIERLRSELDTLK 331
>Z99282-2|CAB16533.1| 613|Caenorhabditis elegans Hypothetical
protein W06G6.1 protein.
Length = 613
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 479 ALIAFLKPYLKPG--NVPLDKKVHVFLWFMVNDSSYSDIGRLFGLHKSSVSYI 631
A++A YL+ N+P DK+ +++L F++ S +++ G++ + + +I
Sbjct: 136 AILATSVDYLRETTYNIPSDKETNLYLKFLLAFSFWTNAGQILSVKEQKPGFI 188
>Z83129-12|CAB05645.1| 613|Caenorhabditis elegans Hypothetical
protein W06G6.1 protein.
Length = 613
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 479 ALIAFLKPYLKPG--NVPLDKKVHVFLWFMVNDSSYSDIGRLFGLHKSSVSYI 631
A++A YL+ N+P DK+ +++L F++ S +++ G++ + + +I
Sbjct: 136 AILATSVDYLRETTYNIPSDKETNLYLKFLLAFSFWTNAGQILSVKEQKPGFI 188
>AL033514-29|CAA22090.1| 333|Caenorhabditis elegans Hypothetical
protein Y75B8A.30 protein.
Length = 333
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 332 YQLSQMMVQDCHSGVPVAHRIKGFYEETIRKFGN 433
Y M+++ H + ++ GFY+E +RK+GN
Sbjct: 129 YPDRMMLIRGNHESRQIT-QVYGFYDECLRKYGN 161
>AB070573-1|BAB63947.1| 294|Caenorhabditis elegans Ser/Thr protein
phosphatase protein.
Length = 294
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 332 YQLSQMMVQDCHSGVPVAHRIKGFYEETIRKFGN 433
Y M+++ H + ++ GFY+E +RK+GN
Sbjct: 90 YPDRMMLIRGNHESRQIT-QVYGFYDECLRKYGN 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,016,467
Number of Sequences: 27780
Number of extensions: 312863
Number of successful extensions: 782
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -