Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29i22
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.0  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 365 HSGVPVAHRIKGFYEETIRK 424
           H GV      KGF++ T+RK
Sbjct: 121 HYGVYSCEGCKGFFKRTVRK 140


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 365 HSGVPVAHRIKGFYEETIRK 424
           H GV      KGF++ T+RK
Sbjct: 121 HYGVYSCEGCKGFFKRTVRK 140


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 210 SMTNSCLILWFFST 169
           S+  +C ++W FST
Sbjct: 71  SLVGNCCVIWIFST 84


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 210 SMTNSCLILWFFST 169
           S+  +C ++W FST
Sbjct: 71  SLVGNCCVIWIFST 84


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 207 MTNSCLILWFFSTLSIFLKYIN 142
           +T  CL  W F   +I L +IN
Sbjct: 388 LTVVCLAFWSFIVSTILLWFIN 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,768
Number of Sequences: 438
Number of extensions: 3789
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)