Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29i19
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 183 3e-47
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 130 2e-31
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 121 9e-29
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 87 2e-18
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 83 4e-17
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 71 2e-13
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 58 2e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 56 4e-09
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 30 0.38
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 29 0.66
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 28 1.2
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 2.0
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|... 27 2.0
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 27 2.7
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 4.7
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 4.7
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 26 4.7
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 8.1
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 8.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 183 bits (445), Expect = 3e-47
Identities = 87/209 (41%), Positives = 133/209 (63%), Gaps = 2/209 (0%)
Frame = +1
Query: 91 MSGDAIGIVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGF--PEVYCGNEAIQ 264
M + +V+D GS KAGFAG+ PRAVFPS VGR R G++ G + Y G+EA
Sbjct: 1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQS 60
Query: 265 KRGISHLTWPVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKIT 444
KRGI L +P+ G++ +WD+MEK+WHH FY L + PE + + PL P+ ++EK+T
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 445 EILFESFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPV 624
+I+FE+F + Y+A L+L+ASGRTTG+V +SG ++ P++EG+ L +A +
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDL 180
Query: 625 DGETLSGHLQKLLATVGYSFTXKADNDIL 711
G L+ +L K+L GY+F+ A+ +I+
Sbjct: 181 AGRDLTDYLMKILMERGYTFSTTAEREIV 209
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 130 bits (314), Expect = 2e-31
Identities = 64/203 (31%), Positives = 118/203 (58%), Gaps = 3/203 (1%)
Frame = +1
Query: 112 IVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGF--PEVYCGNEAIQKRGISHL 285
I +D GS + KAGFAG+ P+ +FP+ VGR + ++ +++ G+EA RG+ +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 286 TWPVSKGLIQDWDEMEKLWHHIFY-KGLLIPPEACSVVHSIHPLCPRKHQEKITEILFES 462
P+ +G+IQ+W +ME++W +I+ + L PE ++ + PL +++EKI E +E+
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 463 FTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGETLS 642
+ +L + LAL+AS RTTG+V E G +++ P+++GF + +A + G ++
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVT 191
Query: 643 GHLQKLLATVGYSFTXKADNDIL 711
+LQ L G+ A+ +I+
Sbjct: 192 DYLQLQLRKSGHELVSSAEKEIV 214
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 121 bits (292), Expect = 9e-29
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 5/201 (2%)
Frame = +1
Query: 112 IVLDIGSKYTKAGFAGECFPRAVFPSTVGR-----FRQSGLVDGFPEVYCGNEAIQKRGI 276
IVLD G+ + K G+A + FPR FPS VGR ++G V +V G+EA R +
Sbjct: 6 IVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQ-IKDVMVGDEAEAVRSL 64
Query: 277 SHLTWPVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKITEILF 456
+ +P+ G+I+D++EM +LW + F++ L I P ++ + P+ P ++EK+ E +F
Sbjct: 65 LQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMF 124
Query: 457 ESFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGET 636
E + +Y+A L+L+A G ++GVV +SG ++ PV+E L + V G
Sbjct: 125 ERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRD 184
Query: 637 LSGHLQKLLATVGYSFTXKAD 699
+ +L LL GY+F AD
Sbjct: 185 ATRYLISLLLRKGYAFNRTAD 205
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 87.0 bits (206), Expect = 2e-18
Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 34/225 (15%)
Frame = +1
Query: 91 MSGDAIGIVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGL-----VDGFP------- 234
M+ + I++D G+ Y+K G+AG P VFP+ + R +G V P
Sbjct: 1 MASFNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKG 59
Query: 235 -------------EVYCGNEAIQKRGISH-LTWPVSKGLIQDWDEMEKLWHHIFYKGLLI 372
+ + GN+A++K + L +P+ G I++WD ME+ W +K L
Sbjct: 60 SGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRC 119
Query: 373 PPEACSVVHSIHPLCPRKHQEKITEILFESFTINSLYLARMQALALFASGRT-------- 528
PE + + PL P +++E EI+FESF LY+A LAL AS +
Sbjct: 120 EPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSL 179
Query: 529 TGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGETLSGHLQKLL 663
TG V +SG ++ PV EG+ + ++ P+ G ++ +Q LL
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLL 224
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 83.0 bits (196), Expect = 4e-17
Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 1/200 (0%)
Frame = +1
Query: 97 GDAIG-IVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGFPEVYCGNEAIQKRG 273
GD + IV+D GSK+T+ GF+GE P+ V PS G F + G +Y N ++ +
Sbjct: 8 GDEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFGEEYIYKSNPGMEIKN 67
Query: 274 ISHLTWPVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKITEIL 453
+ G +++WD LW + + L P ++ + P +++ K E +
Sbjct: 68 A------IRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETM 121
Query: 454 FESFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGE 633
FES + YLA+ + A FASG+ T + + G S + +++GF L+ + G
Sbjct: 122 FESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGN 181
Query: 634 TLSGHLQKLLATVGYSFTXK 693
++ L + L + K
Sbjct: 182 AINDILAQTLRDKNFEVMPK 201
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 70.9 bits (166), Expect = 2e-13
Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 1/192 (0%)
Frame = +1
Query: 112 IVLDIGSKYTKAGFAGECFPRAVFPSTVG-RFRQSGLVDGFPEVYCGNEAIQKRGISHLT 288
+V+D GS +T+ G+AGE P + PS G R +G + + I + +
Sbjct: 13 LVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKN-- 70
Query: 289 WPVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKITEILFESFT 468
S G+IQDW+ W + L + P +++ + P+ +++I E FE
Sbjct: 71 -GKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLH 129
Query: 469 INSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGETLSGH 648
+ + YL + FA+ ++T ++ + G + PV +G +R F + G+ L+ +
Sbjct: 130 VPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAGDFLNAN 189
Query: 649 LQKLLATVGYSF 684
+++L T+ F
Sbjct: 190 IEQLFNTMNIEF 201
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 57.6 bits (133), Expect = 2e-09
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Frame = +1
Query: 292 PVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLCPRK----HQEKITEILFE 459
P+ +G + DW+ ++ W H+ Y LL P + + + + P +E T+ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKHL-YSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 460 SFTINSLYLARMQALALFASGRTTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGETL 639
+ +A + L+A G G+V + GY + P+ +G + AT P+ G +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 640 SGHLQKLL 663
+ HLQ LL
Sbjct: 232 TQHLQNLL 239
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 56.4 bits (130), Expect = 4e-09
Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 4/200 (2%)
Frame = +1
Query: 106 IGIVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGFPEVYCGNEAIQKRGISHL 285
I +V+D GS +AG+ GE P+ VF + V R+R L GN+ + + G +
Sbjct: 25 IPLVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKL--SRTSTLVGNDTLIEVGSRSI 82
Query: 286 T-WPVSKGLIQDWDEMEKLWHHIFYKGLLIPPEACSVVHSIHPLC-PRKHQEKITEILFE 459
P + +I +WD ME++ + F K + E + PL P + +TE+LFE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFLKLGIDRME--HPICMTEPLANPTYVRSTMTELLFE 140
Query: 460 SFTINSLYLARMQALALFASGR--TTGVVWESGYSCSYAAPVFEGFPLRNATFMSPVDGE 633
+ S+ + + + + ++G+V G + S+ PV G + + G
Sbjct: 141 LYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGS 200
Query: 634 TLSGHLQKLLATVGYSFTXK 693
S +L KL SF K
Sbjct: 201 QSSSYLLKLFQIKYPSFPIK 220
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.9 bits (64), Expect = 0.38
Identities = 22/92 (23%), Positives = 38/92 (41%)
Frame = +1
Query: 388 SVVHSIHPLCPRKHQEKITEILFESFTINSLYLARMQALALFASGRTTGVVWESGYSCSY 567
SV+ + L R + EKI +ILF + + F +G + V + G +
Sbjct: 245 SVIFIVPDLYDRVYVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTS 304
Query: 568 AAPVFEGFPLRNATFMSPVDGETLSGHLQKLL 663
+ V EG + N+ G+ ++ KLL
Sbjct: 305 ISCVEEGVVVPNSRIKINYGGDDITLLFMKLL 336
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 29.1 bits (62), Expect = 0.66
Identities = 48/208 (23%), Positives = 84/208 (40%), Gaps = 18/208 (8%)
Frame = +1
Query: 112 IVLDIGSKYTKAGFAGECFPRAVFPSTVGRFRQSGLVDGFPEVYCGNEAIQKRGISHLTW 291
IVLD G+ + KAGFAG P+ + R + DG ++ GNE + L +
Sbjct: 8 IVLDNGAYHIKAGFAGG--KVVEIPNCLTRSK-----DG-NRLFLGNELANCNDFTTLQF 59
Query: 292 --PVSKGLIQDWDEMEKLWHHIFYK-GLLIPPEACSVVHSIHPLCPRKHQEKIT-EILFE 459
KG + W +W + G++ P A + P+ E T +++FE
Sbjct: 60 RRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFE 119
Query: 460 SFTINSLYLARMQALALFASGRTT--------------GVVWESGYSCSYAAPVFEGFPL 597
F ++ L + G T +V +SGYS ++ PV +
Sbjct: 120 EFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFSVQ 179
Query: 598 RNATFMSPVDGETLSGHLQKLLATVGYS 681
A V G+ L+ +L+++++ Y+
Sbjct: 180 EQAVKRVDVGGKLLTNYLKEVISYRKYN 207
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 106 IGIVLDIGSKYTKAGFAG-ECFPRAVFPSTVGRFRQSGLVDGFPEVYCGNEAIQK 267
I ++ +G + A F+ E + FP + ++ G++DGFP NE I K
Sbjct: 11 IQVIAIVGILVSMAYFSFLEALTQEDFPVLIRALKRFGILDGFPNTRLPNEMILK 65
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +3
Query: 432 RKNNRNTLRIIHNQLSVLGKNAGFSSVCKRSDYGSCLGERVLMLIRSPSL*RISIK 599
RKN+ N L +I LSV + F VC + Y C GE L S ++ +S K
Sbjct: 1365 RKNDANDLDVI---LSVCNLLSPFEVVCLLNRYQPCAGENPLPKSFSKAVEALSCK 1417
>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 104
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 455 KSISVIFSWCFLGHKGWIECTTL 387
K+I V+ ++ +L +K WI CTT+
Sbjct: 33 KNIIVLSNYLYLLYKAWIVCTTI 55
>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 155 QENVSQEQSFRAPSGDFVNQVSLTDSQRSTVE 250
Q V+ E++ APS N+ +LTDS VE
Sbjct: 312 QTKVTIEENMEAPSHQAANRTTLTDSPLGIVE 343
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 340 WHHIFYKGLLIPPEACSVVHSIHPLCPRKHQEKITEI 450
W H ++KG L+P + V+ S HP+ H +T +
Sbjct: 798 WQHNYWKGKLVPGD---VLLSNHPIAGGVHLPDLTVV 831
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 445 LLFFLGASLGIKDGSSARHCKLLEV*VGLYRKCDAK-ASPSHPN 317
+L F +S + A +CKLL + YR CDA+ S PN
Sbjct: 1696 VLKFYKSSSSFSENLEAYYCKLLVLAELCYRLCDAQTVSQKAPN 1739
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 83 ETKCQATLSALCWILDPNILRLVSQENVSQEQSFRAP 193
+TK + ++ I DP IL +V +E +++ SF +P
Sbjct: 427 DTKPIVNVPSIVEIDDPTILDIVEEEPLARNDSFSSP 463
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 485 KYRELIVNDSKSISVIFSW 429
KY++ I+N KS IF W
Sbjct: 144 KYQKSIINQLKSFEAIFDW 162
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 425 FLGHKGWIECTTLQASG 375
F+GHKG + C ++ SG
Sbjct: 375 FIGHKGRVRCLSVHVSG 391
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,885
Number of Sequences: 5004
Number of extensions: 64614
Number of successful extensions: 235
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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