Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29i15
(452 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82095-7|CAN86628.1| 390|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z82095-6|CAI79281.2| 412|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z82095-5|CAB05026.2| 414|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z68298-8|CAA92605.3| 449|Caenorhabditis elegans Hypothetical pr... 29 2.1
AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical ... 29 2.1
AL132860-32|CAO82074.1| 570|Caenorhabditis elegans Hypothetical... 27 4.8
AL132860-31|CAB60519.2| 457|Caenorhabditis elegans Hypothetical... 27 4.8
AF100304-4|AAC68910.1| 568|Caenorhabditis elegans Gex interacti... 27 8.4
AF100304-2|AAU20837.1| 564|Caenorhabditis elegans Gex interacti... 27 8.4
AF100304-1|AAC68913.1| 545|Caenorhabditis elegans Gex interacti... 27 8.4
>Z82095-7|CAN86628.1| 390|Caenorhabditis elegans Hypothetical
protein ZK849.2c protein.
Length = 390
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 3 VEKKILAAMNKECKKREKTASNLNESIKAKLKESLTQ 113
VE+ ++ + +C+ KTA + ++ IK KL+ LTQ
Sbjct: 102 VEQLMIQVHSLQCQLHSKTAPHESDMIKKKLETQLTQ 138
>Z82095-6|CAI79281.2| 412|Caenorhabditis elegans Hypothetical
protein ZK849.2b protein.
Length = 412
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 3 VEKKILAAMNKECKKREKTASNLNESIKAKLKESLTQ 113
VE+ ++ + +C+ KTA + ++ IK KL+ LTQ
Sbjct: 124 VEQLMIQVHSLQCQLHSKTAPHESDMIKKKLETQLTQ 160
>Z82095-5|CAB05026.2| 414|Caenorhabditis elegans Hypothetical
protein ZK849.2a protein.
Length = 414
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 3 VEKKILAAMNKECKKREKTASNLNESIKAKLKESLTQ 113
VE+ ++ + +C+ KTA + ++ IK KL+ LTQ
Sbjct: 126 VEQLMIQVHSLQCQLHSKTAPHESDMIKKKLETQLTQ 162
>Z68298-8|CAA92605.3| 449|Caenorhabditis elegans Hypothetical
protein F44D12.9 protein.
Length = 449
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 81 CFRLDWKQFFHASYILYSWLLIF 13
CFR+ W Q F+ Y+ + LLIF
Sbjct: 264 CFRMCWVQLFNNFYVYFVSLLIF 286
>AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical
protein Y54E2A.8 protein.
Length = 485
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 143 KSNFKNETE*REEGGILQLQEHVVAKRGVARRRPTEESEQTHEKTCEKCQNQK 301
K K E + R G+LQL+ + +RR E E+ E+ EK + +K
Sbjct: 283 KEKLKKELDRRPNDGVLQLETEDFDWKPRRKRRKELEKEREAEEAAEKRKKEK 335
>AL132860-32|CAO82074.1| 570|Caenorhabditis elegans Hypothetical
protein Y56A3A.7b protein.
Length = 570
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 42 KKREKTASNLNESIKAKLKESLTQNTVVTGDTASNQISRTRQSNVKK 182
+++EK + E+IK ++++ NT++ AS R R ++K
Sbjct: 274 EEKEKRREEIRENIKKEMEKKEQVNTLIREKLASMNARRKRLQEIRK 320
>AL132860-31|CAB60519.2| 457|Caenorhabditis elegans Hypothetical
protein Y56A3A.7a protein.
Length = 457
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 42 KKREKTASNLNESIKAKLKESLTQNTVVTGDTASNQISRTRQSNVKK 182
+++EK + E+IK ++++ NT++ AS R R ++K
Sbjct: 274 EEKEKRREEIRENIKKEMEKKEQVNTLIREKLASMNARRKRLQEIRK 320
>AF100304-4|AAC68910.1| 568|Caenorhabditis elegans Gex interacting
protein protein4, isoform b protein.
Length = 568
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 173 REEGGILQLQEHVVAKRGVARRRPTEESEQTHEKT 277
R E L+ Q +R VA++ P EES +HE++
Sbjct: 347 RAEAARLRYQRMTPDQRKVAKQEPKEESWPSHEQS 381
>AF100304-2|AAU20837.1| 564|Caenorhabditis elegans Gex interacting
protein protein4, isoform f protein.
Length = 564
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 173 REEGGILQLQEHVVAKRGVARRRPTEESEQTHEKT 277
R E L+ Q +R VA++ P EES +HE++
Sbjct: 343 RAEAARLRYQRMTPDQRKVAKQEPKEESWPSHEQS 377
>AF100304-1|AAC68913.1| 545|Caenorhabditis elegans Gex interacting
protein protein4, isoform a protein.
Length = 545
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 173 REEGGILQLQEHVVAKRGVARRRPTEESEQTHEKT 277
R E L+ Q +R VA++ P EES +HE++
Sbjct: 324 RAEAARLRYQRMTPDQRKVAKQEPKEESWPSHEQS 358
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,064,727
Number of Sequences: 27780
Number of extensions: 161998
Number of successful extensions: 480
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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