Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29i12
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.6  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    26   6.3  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   6.3  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = +2

Query: 8    YYFRYAYDLNKRKCIKFPYSGYGGNVNRFDSLNECVKACDPAKL---SLENYYKAARSVL 178
            Y       +N R+ I+  Y  +   +  FDS+N   KAC P  L   S+ NY K     L
Sbjct: 3268 YNLEKELSINLRRKIEQDY--FSNPIFTFDSVNRASKACGPLLLWIKSICNYSKVLEK-L 3324

Query: 179  KQRKYEED*NLKL*HQKN 232
            +    E D  LKL  QKN
Sbjct: 3325 EPLNSEVD-RLKL-EQKN 3340


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +2

Query: 101 LNECVKACDPAKLSLENYYKAARSVLKQRKYEE 199
           LN+C +         + YY++A++++  ++Y+E
Sbjct: 122 LNDCAQVLQRDSTHAKAYYRSAKALVALKRYDE 154


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 548 SDYDFLRSICKNNSDECSEFR 610
           S  DFL    KNN+D+ S+FR
Sbjct: 23  SQSDFLGKSLKNNNDDYSDFR 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,117
Number of Sequences: 5004
Number of extensions: 46325
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)