Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29i10
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    26   4.8  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    26   6.4  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   6.4  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.4  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.4  

>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 381 DVLMKRQQQPLK---EDSSIRDFRVVCEKALLEQQKQLARVTQLCEKLTERQATEI 539
           DV+   +Q  LK   ED S+     + E   L++ + LAR T++C K     + EI
Sbjct: 125 DVIACCKQLVLKNFFEDESLMSTEEIIEILSLDELRSLARQTKVCGKSRSEISKEI 180


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 42  PTREESPPYLFSYP*VMASSGSWRGGAQPNI 134
           P+    PP L + P     S SW  G+Q NI
Sbjct: 351 PSPSIQPPNLLNLPTASPESTSWLPGSQTNI 381


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 336 SCRQRVRSHASTSCTGCVRYAPLNCHCWTALVLCSD 229
           SC   V + AS  C     ++ L+CH  +  V C +
Sbjct: 414 SCASGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQN 449


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 387 LMKRQQQPLKEDSSIRDFRVVCEKALLEQQKQLARVTQLCEKLTERQATE 536
           ++ R+Q+  KE+  I++        LLE+Q+QL    +  E  TER  +E
Sbjct: 126 MVNRKQRAAKEEQKIQEEFERQITDLLEEQQQLKLEIERLEAETERANSE 175


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 285 VRYAPLNCHCWTALVLC 235
           ++Y   NCHC +A  LC
Sbjct: 460 IQYVLSNCHCLSAFYLC 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,894
Number of Sequences: 5004
Number of extensions: 44588
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)