Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29i10
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0227 + 13967966-13968559                                         33   0.23 
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005...    30   2.2  
05_07_0082 + 27575924-27576917,27577371-27577732                       29   5.0  
01_03_0009 + 11601394-11601666,11602486-11602683,11602809-116030...    29   5.0  
07_03_0120 + 13653668-13654384                                         28   6.6  
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875...    28   8.8  
03_05_0469 + 24640925-24641081,24641292-24641644,24641870-246420...    28   8.8  

>01_03_0227 + 13967966-13968559
          Length = 197

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 644 LRAVMILPPLIPGTATGRRQLAAVRRLPDDRPV 546
           + AV  LPPL+P TA GRR++ A    P +  V
Sbjct: 85  ITAVSFLPPLVPATAMGRRRVVARSHPPPELAV 117


>01_06_0787 - 31999632-32000045,32000128-32000214,32000295-32000584,
            32000670-32000844,32000930-32001142,32001227-32001328,
            32001418-32001822,32001922-32002134,32002312-32002357,
            32002602-32002867,32003936-32004012,32004095-32004170,
            32004339-32004418,32004945-32005036,32005132-32005171,
            32005301-32005400,32005815-32005962,32006071-32006153,
            32006207-32006383
          Length = 1027

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 250  GPAVTVQGSIPHAPSARGTRMTPDSLTAAT 339
            G  VTV   +P +PSA    ++PDS+ A T
Sbjct: 975  GSLVTVAFQVPASPSAAAATLSPDSVEAVT 1004


>05_07_0082 + 27575924-27576917,27577371-27577732
          Length = 451

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
 Frame = +3

Query: 72  FSYP*V----MASSGSWRGGAQPNIIDL----DRYMRAGVRPADDVSDAQES 203
           F YP V    + +S SW  GA P  +      D+  RAG+  ADD    QE+
Sbjct: 282 FGYPAVQLPTLETSSSWAFGAPPQAMSSFTAKDKVERAGISQADDGKKTQEA 333


>01_03_0009 +
           11601394-11601666,11602486-11602683,11602809-11603081,
           11603493-11603595,11603666-11603784,11604038-11604214,
           11604443-11605192
          Length = 630

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 321 VRSHASTSCTGCVRYAPLNCHCW 253
           +R H   S T CV +AP +C  W
Sbjct: 266 LREHQELSSTTCVAFAPASCMTW 288


>07_03_0120 + 13653668-13654384
          Length = 238

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 26/84 (30%), Positives = 35/84 (41%)
 Frame = +2

Query: 470 AAEAIGARHSAVRETDRETGDRNKV*QDGRQGVFGQQRAVFDQSQYRG*EAEGS*PHAEM 649
           A  ++ ARH     TD   G+RN V  DG  G  G +  VFD    R     G   +A  
Sbjct: 82  ARGSVAARHITEAFTD---GERNLVIGDGGDGRHGMEVPVFDAEGRRYGLTCGYSDYAMC 138

Query: 650 QDLQNYNEQTGRVESSLRSKRTLA 721
             L     + GR  ++ R  R +A
Sbjct: 139 YRLFGAAREFGRFRANNREVRDVA 162


>05_03_0475 +
           14486969-14487140,14487215-14487338,14487424-14487559,
           14487663-14488997
          Length = 588

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 229 PPASTISRSLSCASDTSSAGRTPARMYLSR 140
           PPAS +SRS S  S  S+    P  ++  R
Sbjct: 154 PPASRLSRSSSATSQLSTVAHAPGTVFSGR 183


>03_05_0469 +
           24640925-24641081,24641292-24641644,24641870-24642043,
           24642382-24642506,24643011-24643059,24643741-24643899,
           24644037-24644219
          Length = 399

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 375 ASDVLMKRQQQPLKEDSSIRDFRVVCEKALLEQQKQLARVTQLCEKLTERQATEIKCDRT 554
           A +  ++R +Q      S  DF+   +K + E++K+L    +  EK      +E+KC  T
Sbjct: 200 AYEACLQRLEQETYNILSETDFQKERQKVIEEEEKKLKAAIEEAEKQYSEICSEMKCLET 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,464,757
Number of Sequences: 37544
Number of extensions: 369308
Number of successful extensions: 1144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)