Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29i09
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591...    38   0.005
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876...    31   1.1  
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553...    29   3.3  
09_06_0177 + 21365314-21366100,21367451-21367578,21367715-213678...    29   3.3  
05_03_0216 + 10370531-10371922,10378656-10378808                       29   3.3  
12_02_0580 + 20776820-20777247,20777341-20778109,20779280-207794...    29   4.4  

>02_05_0094 -
           25758213-25758479,25758886-25758975,25759090-25759118,
           25759208-25759307,25759411-25759545
          Length = 206

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 102 SFKMACEVCDHCHESLHRNEDIVVWEGYSFHNRCHKCFVCSET-DLLNAEIFKGAIFCGK 278
           SF    + C  C +++H   D++  +G S+H  C KC  C  T  + N     G ++C  
Sbjct: 2   SFTGTQDKCKACDKTVHFI-DLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKT 60

Query: 279 CSKRIFNDCAS 311
             +++F +  S
Sbjct: 61  HFEQLFKETGS 71


>03_02_0476 +
           8768182-8768313,8768734-8768833,8768949-8768986,
           8769102-8769191,8769465-8769695
          Length = 196

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 126 CDHCHESLHRNEDIVVWEGYSFHNRCHKCFVCSET-DLLNAEIFKGAIFCGKCSKRIFND 302
           C  C ++++  + +   +G  FH  C KC  C  T  L N    +G  +C    +++F +
Sbjct: 9   CKVCTKTVYPMDQLST-DGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHFEQLFKE 67

Query: 303 CAS 311
             S
Sbjct: 68  TGS 70



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 120 EVCDHCHESLHRNEDIVVWEGYSFHNRCHKCF--VCSETDLLNAEIFKGAIFCGKCSKRI 293
           E C  C ++ +  E + V EG ++H  C KC    C+ +   N    +G ++C     ++
Sbjct: 106 EKCATCSKTAYPLEKVTV-EGQAYHKSCFKCSHGGCAISP-SNYAALEGILYCKHHFSQL 163

Query: 294 FNDCAS 311
           F +  S
Sbjct: 164 FKEKGS 169


>11_06_0756 +
           26952196-26952264,26952760-26953206,26954009-26955358,
           26955400-26955408
          Length = 624

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 114 ACEVCDHCHESLHRNEDIVVWEGYSF 191
           A  VCDHCH   HR++  ++  GYS+
Sbjct: 348 AATVCDHCH---HRHQQQLLAVGYSY 370


>09_06_0177 + 21365314-21366100,21367451-21367578,21367715-21367870,
            21368006-21368196,21369392-21369434,21369537-21369627,
            21369859-21369935,21370278-21370366,21370474-21370657,
            21370885-21371138,21371465-21371567,21371646-21371977,
            21372060-21372504
          Length = 959

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = +3

Query: 396  NYSGPGYNEIDSKTQAIR-----DPIVVTYKKGEKNNRPIRKVCIDTGITTVVTQELLDH 560
            N S   ++   S+ Q I+     +P+ +T  +GE +  P   +C  TGI +VV  +   +
Sbjct: 834  NRSNISWDAFSSQVQTIQKGFIGEPMEITPGRGEFHANPAACICEKTGIKSVVGSDSRSN 893

Query: 561  FNNVQSSKERN 593
               V S++  N
Sbjct: 894  RETVNSTEISN 904


>05_03_0216 + 10370531-10371922,10378656-10378808
          Length = 514

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 506 SLHRHGYNDSGNSGAVRPLQQCTVFERTERYVLSEDLFKRFKRQPT 643
           +L R GY ++   G   PL+ C  FER    ++S D     + +PT
Sbjct: 16  ALSRKGYCNA-TEGRQLPLELCKEFERLNLGIVSRDFIAALEAKPT 60


>12_02_0580 +
           20776820-20777247,20777341-20778109,20779280-20779447,
           20779877-20780236
          Length = 574

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = +2

Query: 500 KKSLHRHG-YNDSGNSGAVRPLQQCTVFERTE-----RYVLSEDLFKRFKRQPT 643
           K SL+ HG  +D  N  AVR L+ CT  +  E     R + +ED  K     PT
Sbjct: 361 KLSLYSHGGADDETNVAAVRLLKSCTAVDHLELRLTVRVLPAEDTVKDIPHLPT 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,091,321
Number of Sequences: 37544
Number of extensions: 275846
Number of successful extensions: 803
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)