Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29i09
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    28   0.092
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   0.86 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 0.092
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 117 CEVCDHCHE---SLHRNEDIVVWEGYSFHNRCHKCFVCSETDLLNAEI 251
           C+VC+   E    LHR+  I   E      R HKC VCS+T + + ++
Sbjct: 150 CDVCERAFEHSGKLHRHMRIHTGE------RPHKCTVCSKTFIQSGQL 191



 Score = 25.4 bits (53), Expect = 0.49
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 126 CDHCHESLHRNEDIVVWEGYSFHNRCHKCFVCSET 230
           CD C +S   N  + + +   +  + +KC +C ET
Sbjct: 234 CDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHET 268



 Score = 24.6 bits (51), Expect = 0.86
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 126 CDHCHESLHRNEDIVVWEGYSFHNRCHKCFVC 221
           C++C +S    E++ V        R +KC VC
Sbjct: 122 CEYCSKSFSVKENLSVHRRIHTKERPYKCDVC 153


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 361 GERNEARIR-RNLIIVDRVITKLTARRKPFAILLL*HTKKEKRIID 495
           G+  E+++  + + + D  I     RR+PF++ +  H K   R+ID
Sbjct: 53  GDDTESKLPVKAITLPDLSIPMQLGRRQPFSLFIPAHRKIAARLID 98


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 118 VKYAITATNLYIVTKILWFGKDTASTTDATNV 213
           +K +I   N   + +I+W  K+T++ TDA  V
Sbjct: 277 LKTSIILMNGTTLPQIMWGTKETSTRTDAYTV 308


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 588  VLSKTVHC*SGLTAPELPLSL 526
            V S  +HC +   APE P+++
Sbjct: 1166 VKSAPIHCQTEQDAPEAPIAI 1186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,630
Number of Sequences: 438
Number of extensions: 3628
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)