Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29i07
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    35   0.009
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       32   0.066
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    30   0.35 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    28   1.1  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    28   1.4  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         27   3.3  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   3.3  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   3.3  
SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38 |...    26   4.3  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   4.3  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    26   5.7  
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    26   5.7  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   7.6  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    25   10.0 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   10.0 
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   10.0 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   10.0 
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    25   10.0 

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +3

Query: 543 LPQNVKPENYYLNITPFFLENNFTFQGEVTILLTVFNETNEI 668
           LP+NVKP +Y L++ P      FT+ G+V + L V  ++N I
Sbjct: 20  LPKNVKPIHYDLSLYPDL--ETFTYGGKVVVTLDVLEDSNSI 59


>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 32.3 bits (70), Expect = 0.066
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 512 IVHDVFTFCIFDFLYFILTYSYISF--CC*FLIVSLYIPV 399
           I H +F F +F F YF+L  + I F  C  +  +S Y P+
Sbjct: 7   IKHSIFQFFVFPFYYFLLIITEIGFSSCIQYSGLSAYFPI 46


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +3

Query: 366  SLNETNKDIPKDRNIEANDKKSATERNIAISKNEIEKVK----DAEGKDVMNDTNLE 524
            S +   + I K++  +   +K  TE+ +A SKNE+E ++    DA+GK  +++   E
Sbjct: 1473 SASSDAEQITKEQFEQLKSEKERTEKELADSKNELEHLQSEAVDADGKTEISNLEKE 1529


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +3

Query: 399 DRNIEANDKKSATERNIAISKNEIEKVKDAEGK 497
           + N++ + + +ATE  + + K ++EK+K +EGK
Sbjct: 725 EANVDTSKQTNATEPEV-VDKTKVEKLKASEGK 756


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 20/99 (20%), Positives = 46/99 (46%)
 Frame = -3

Query: 397 LGISLLVSLRDSLASATLQSSYFVTLAS*SVLGQAAKLYTKSDDVTKVSTNITNINRTNG 218
           LG S+ +SLR +LA   L +S   + +  S+    + L   +  +TK+      ++    
Sbjct: 176 LGTSISMSLRPNLARPLLTASSVKSQSVRSLREVGSNLPIPTGSLTKIDGLNNQLSNDLT 235

Query: 217 FDRMIPLSVFVVPSTTFNGSCVCIDKSPLARPSCDVWSI 101
             +   +  F   +++F  +   ++++ +   +C VWS+
Sbjct: 236 RSQTTNIFGFAEKASSFAAAVHKLNEARIRNQACHVWSL 274


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 469 ISFLLIAIFLSVA-DFLSLASIFLSLGISLLVSLRDSLASATLQSSYFVTLAS*SVLG 299
           ISF+L+A    +  DF       L+L +  +  L  +LA  T Q   F+TL S +V+G
Sbjct: 392 ISFILVAFGAPLLHDFHLTYFCALTLSVFTVYPLASTLAFNTEQWQRFLTLKSFNVIG 449


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
 Frame = +3

Query: 309 DQLANVTKYELCRVAEAKLSLNETNKDIPK---------DRNIEANDKKSATERNIAISK 461
           D++ N  K +L R  E ++SL      + +         +R     DK+ +  R  A  K
Sbjct: 421 DEMENELKAKLSRKKEIEISLESQGDRMSQLLANITSINERKENLTDKRKSLWREEAKLK 480

Query: 462 NEIEKVKD--AEGKDVMNDT-NLETPKEFR----LPQNVKPENYYLNITPFF-LENNFTF 617
           + IE VKD  +  +  +  T +  T    R    + + +K E YY  +   F ++N F  
Sbjct: 481 SSIENVKDDLSRSEKALGTTMDRNTSNGIRAVKDIAERLKLEGYYGPLCELFKVDNRFKV 540

Query: 618 QGEVTILLTVFN 653
             E T   ++F+
Sbjct: 541 AVEATAGNSLFH 552


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 441 RNIAISKNEIEKVKDAEGKDVMNDTNLETPKEFRLPQNVKPENYYLNITPF 593
           RN   S + +E V   E  D+ +++  +  +  RL  N   E  YL++ PF
Sbjct: 412 RNHLTSLSGLENVPSLEKLDIRDNSITDVVEFRRLVGNTNFEEAYLSLNPF 462


>SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 401 VFRYIFISFIKGQFSFRNSTEFVFCDISQLISFRAGSEIVHQ 276
           V R + + +I GQ+  +  TEF+ C + +L+      EI+ Q
Sbjct: 52  VDRAVRLEYIGGQYGNQRPTEFI-CLLYKLLQIAPEKEIIQQ 92


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 518 ICIVHDVFTFCIFDFL 471
           ICIV D+F + +FDFL
Sbjct: 437 ICIVTDLFGWSVFDFL 452


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +3

Query: 294 ACPKTDQLANVTKYELCRVAEAKLSLNETNKDIPKDRNIEANDKKSATERNIAISKNEIE 473
           A  + DQL          V + K+SL  TN DI  +  ++   K+ A +R   +  NE++
Sbjct: 440 ATKRCDQLNREIDILQNHVEKLKMSLKNTNSDITGEDVLQQKLKQLAKDRGNLL--NELD 497

Query: 474 KVK 482
            +K
Sbjct: 498 ALK 500


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/61 (22%), Positives = 26/61 (42%)
 Frame = +3

Query: 297 CPKTDQLANVTKYELCRVAEAKLSLNETNKDIPKDRNIEANDKKSATERNIAISKNEIEK 476
           C + D+L N    ++ R  +A   +       P D     +  KS  E N+A+   ++ K
Sbjct: 53  CVRGDELLNEAIKKVYRTKDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVK 112

Query: 477 V 479
           +
Sbjct: 113 I 113


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +3

Query: 339 LCRVAEAKLSLNETNKDIPKDRNIEANDKKSATERN 446
           + R+     + N+T+ +  +D + E +D+KS+ ++N
Sbjct: 348 ILRIGYRAFTTNDTHDERSEDEDEEVSDEKSSAKKN 383


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 366 SLNETNKDIPKDRNIEANDKKSATERNIAISKNEIEKVKDAEGKDVMND 512
           SLNE   ++ +D N   ND++ A +  I +   + ++    E +D   D
Sbjct: 57  SLNEMEVEM-EDENENENDEQEAIQYYINVESQDADETLHQEAQDSSED 104


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 93  LVVREYRHDRSWRESVRDWQRASRVTSEN 7
           L + E + D+S+R+++ D  R +R+ SEN
Sbjct: 131 LEIIEKKLDKSFRKNMEDELRITRLASEN 159


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 375 ETNKDIPKDRNIEANDKKSATERNIAISKNEIEKVKDAEGKD 500
           ET+    +  +IEANDK   T+     SK   +KV++ E K+
Sbjct: 455 ETDVKAKETDSIEANDKDEKTD-----SKETEDKVEETESKE 491


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 33/125 (26%), Positives = 56/125 (44%)
 Frame = -3

Query: 538  NSLGVSKFVSFMTSLPSASLTFSISFLLIAIFLSVADFLSLASIFLSLGISLLVSLRDSL 359
            +S  ++   +  TS P  S T   S   I     +    ++AS  + L  S  ++    L
Sbjct: 3416 SSTPITSSTALNTSTPITSSTVVNSSTPITSSSVLNSSTAIASSSI-LNSSTPITSSSVL 3474

Query: 358  ASATLQSSYFVTLAS*SVLGQAAKLYTKSDDVTKVSTNITNINRTNGFDRMIPLSVFVVP 179
             S+T  SS  V  +S  V+G ++ L   S  V+ VS N + ++ + GF      S F   
Sbjct: 3475 NSSTPISSSTVITSS-VVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSS----SAFSTG 3529

Query: 178  STTFN 164
            S++F+
Sbjct: 3530 SSSFS 3534


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +3

Query: 351 AEAKLSLNETNKDI-PKDRNIEANDK----KSATERNIAISKNEIEKVKDAEGKDV 503
           A+ K++ N+ + DI P++  +  ND     KSA   N+      +   KDA  KD+
Sbjct: 121 AQNKIATNKESTDILPEEVQLVLNDLNDDVKSANSANLQPITTNVVNEKDAYRKDI 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,530
Number of Sequences: 5004
Number of extensions: 49867
Number of successful extensions: 189
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)