Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29i07
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0604 - 19215017-19215101,19215870-19216021,19216591-192166... 31 1.1
03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453... 29 2.6
03_05_0429 - 24157060-24157671,24158000-24158468,24158679-241587... 29 3.4
07_03_1317 - 25746608-25746703,25747001-25747135 29 4.5
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917... 29 4.5
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 28 5.9
11_03_0184 + 11317787-11318198,11318337-11318671,11318756-113190... 28 7.8
10_01_0133 + 1621574-1625779 28 7.8
09_01_0163 + 2415875-2415877,2417777-2418271 28 7.8
08_02_1395 - 26737972-26738418,26738505-26738738,26738887-267391... 28 7.8
>08_02_0604 -
19215017-19215101,19215870-19216021,19216591-19216614,
19216656-19216884,19217061-19217177,19219249-19219311,
19219887-19220125
Length = 302
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -3
Query: 514 VSFMTSLPSASLTFSISFLLIAIFL-SVADFLSLASIFLSLGISLLVSL 371
V F+ P + S+ F L A L S+ L +ASI LS+G ++L+SL
Sbjct: 122 VIFLNITPLFTFILSLMFRLEAFKLRSIPGVLKIASILLSIGGTMLISL 170
>03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,
4535753-4535809,4535940-4536280,4536979-4537047,
4537152-4537219,4537404-4539569,4540101-4540178,
4540326-4540437,4540722-4540772,4540886-4540936
Length = 1178
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +3
Query: 336 ELCRVAEAKLSLNETNKDIPKDRNIEANDKKSATERNIAISKNEIEKVKDAEGK-DVMND 512
EL EA L NET + + E N + + +A N I + + +G D
Sbjct: 862 ELGEFREASLE-NETGR---AKKQFERNSSSKSLDGKLANVDNSIPSMANRKGSLSSSQD 917
Query: 513 TNLETPKEFRLPQNVKPENYYLNITPFFLENN 608
+P+EF + N+ E + + + +NN
Sbjct: 918 QRKPSPREFGIGGNINQEGFPKKASGYDFDNN 949
>03_05_0429 -
24157060-24157671,24158000-24158468,24158679-24158752,
24159231-24159280,24159368-24159449,24159526-24159575,
24159666-24159708,24159804-24159884,24159988-24160033,
24160151-24160197,24160358-24160423,24160701-24160767,
24160913-24160998
Length = 590
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -3
Query: 547 GKRNSLGVSKFVSFMTSLPSASLTFSISFLLIAIFLSVADFLSLASI-FLSLGISLLVSL 371
G+RNSLG + V+F P T SI S+ D+ + S+ LS+ +SL+ +
Sbjct: 292 GRRNSLGNERIVTFSKPSPERKFTSSIQ--------SIKDYSTTRSVKDLSIDVSLVEEV 343
Query: 370 RDSLASATLQSSYFVT 323
T SS T
Sbjct: 344 SSKTTFTTRTSSIVKT 359
>07_03_1317 - 25746608-25746703,25747001-25747135
Length = 76
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 45 ARIPATICH---ACIRAQLSRTMDQTSQLGRANGDLSMQTHEPLNVVDGTTKTERG 203
A+IP + H AC+R +L +T DQ + G N + NVV+ TT G
Sbjct: 21 AQIPTSFGHELRACLRCRLVKTYDQFMEQGCENCPFLDMERDHDNVVNCTTPNFTG 76
>03_02_0955 - 12690405-12690842,12690940-12691130,12691208-12691718,
12692240-12693171,12693260-12693351,12693430-12693509,
12693568-12693621,12693734-12693850,12693949-12694194,
12694273-12694432,12694512-12694576,12694686-12694877,
12694980-12695061,12695153-12695925
Length = 1310
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +3
Query: 312 QLANVTKY--ELCRVAEAKLSLNETNKDIPKDRNIEANDK--KSATERNIAISKNEIEKV 479
Q+ + KY +L ++ + L L + + +D I++ D+ +++T A S+N E+
Sbjct: 1191 QIEDYEKYLIQLSKLTKVNL-LRHAKRSVARDFKIQSKDELERNSTAARAASSENMPEE- 1248
Query: 480 KDAEGKDVMNDTN 518
DAEG D +TN
Sbjct: 1249 -DAEGPDAPLETN 1260
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 84 AQLSRTMDQTSQLGRAN-GDLSMQTHEP 164
A LS + DQT++ GRA+ GDL++ +P
Sbjct: 652 ADLSTSADQTNEAGRASPGDLNLSESDP 679
>11_03_0184 +
11317787-11318198,11318337-11318671,11318756-11319048,
11319125-11319483,11319549-11319748,11319823-11320012,
11320084-11320188,11320262-11320338,11320428-11320649
Length = 730
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 390 IPKDRNIEANDKKS-ATERNIAISKNEIEKVKDAEGKDVMNDTNLETPKEFRLPQNVKPE 566
+ K I NDK A +RN+A+ + E K+K DV+ ++ + R V P+
Sbjct: 605 LEKQIQILENDKAELARQRNLALKEVEDRKIKSQAQFDVLVG-KIKKLEGSRDELRVAPD 663
Query: 567 NYYLNI 584
Y+ NI
Sbjct: 664 TYFKNI 669
>10_01_0133 + 1621574-1625779
Length = 1401
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 445 FLSVADFLSLASIFLSLGISLLVSLRDSLASATLQSS 335
FL + D+ + ++ + IS L+ LR LAS LQSS
Sbjct: 720 FLDLQDWTGMTTVPKHMQISHLIYLRQFLASKELQSS 756
>09_01_0163 + 2415875-2415877,2417777-2418271
Length = 165
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 459 KNEIEKVKDAEGKDVMNDTNLETPKEFRLPQNVKPENYY 575
K IEK+K A+G+DV N+ E F + N NY+
Sbjct: 14 KEYIEKLKQAKGEDVANEIITEALYVFSIGTNDFIINYF 52
>08_02_1395 -
26737972-26738418,26738505-26738738,26738887-26739183,
26739399-26739581,26739778-26739834,26739960-26740016,
26740228-26740322,26740714-26740765,26740821-26740910
Length = 503
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 483 DAEGKDVMNDTNLETPKEFRLPQ 551
+ EG D ND+ ++TP++ RLP+
Sbjct: 202 EPEGFDGSNDSGVQTPQQLRLPR 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,267,214
Number of Sequences: 37544
Number of extensions: 286340
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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