Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29i06
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 30 0.34
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc... 27 2.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.2
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 27 3.2
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.2
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 26 5.5
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 9.7
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 25 9.7
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 29.9 bits (64), Expect = 0.34
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +3
Query: 270 LKWDEDPLIEYTIPITYKIVFKKANEQTKYTYKDDSNKFYYSCVDLLIPSAL 425
L+ DE PL+ + I+ ++++ QT+ +++DDS+ F S V IP+ L
Sbjct: 119 LRRDELPLVPESFTISSSYPIQRSSTQTRSSFEDDSSDFDLSEV-TTIPALL 169
>SPAC926.05c |||diphthamide biosynthesis protein Dph4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 246 KSIENFNNLKWDEDPLIEYTIPIT---YKIVFKKANEQTKYTYKDDSNKFYYSCVDL 407
K++ F+ K E P + YTI Y+++ + + Q +++ + YYS VDL
Sbjct: 26 KALLLFHPDKCKEKPSVVYTIDQVKEAYQVLSSEKDRQQYQIKQEEESSHYYSIVDL 82
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 318 YKIVFKKANEQTKYTYKDDSNKFYYSC-VDLLIPSA 422
+K + NE+ K + K+DS+KF+ S + +P++
Sbjct: 43 FKTTISQNNEEVKTSLKEDSSKFHPSASAPIFVPTS 78
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/60 (21%), Positives = 34/60 (56%)
Frame = +3
Query: 453 LKRHKSDTIVLDKHIVDVFYKKMGSEFTIKDYRDDSTKEISDYKLCYDKSKNKISENINE 632
LK+ +D+ +L K++ ++ + + + + + E +DY+L ++ ++KIS+ + E
Sbjct: 53 LKQSATDSELLHKNLDEIKFLQ-NEKLNNEKLLEQEQNEANDYRLKVERLEHKISDYVQE 111
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 26.2 bits (55), Expect = 4.2
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 361 HIRMILTNFITHASIYSFLRLYQIITKALEI*KDIKVTQ*FLTNIL*MSSIKRWEVNLQL 540
HI +I NF+ S L L+ I ++ D+K LT SS+K+ N QL
Sbjct: 320 HIELISDNFLL-IQHDSQLSLWDITFGTIQDVYDLKQKPTILTFTCYKSSLKKMNQNSQL 378
Query: 541 KIIEMIALKK-LVITNYVM 594
+ LKK L I Y +
Sbjct: 379 TGYIAVLLKKGLAIVPYTL 397
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 25.8 bits (54), Expect = 5.5
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +3
Query: 360 TYKDDSNKFYYSCVD--LLIPSALSNNYEGSGDLKRHKSDTIVLDKHIVDVFYKKMGSEF 533
TYKD NK V + S + S D + K D +V F + G+E
Sbjct: 433 TYKDLPNKLAKVKVSDRTIYKSTDAERRLVSPDGLQEKIDALVAKYEKGRSFVRASGTED 492
Query: 534 TIKDYRDDSTKEISDYKLC 590
++ Y + STK+ +D +LC
Sbjct: 493 VVRVYAEASTKQAAD-ELC 510
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 9.7
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 14/148 (9%)
Frame = +3
Query: 237 PQIKSIE--NFNNLKWDEDPLIEYTIPITYKIVFKKANEQTK---YTYKDDSNKFYYSCV 401
P KS+E N++ D L+E + + VFK NE+ K K D +
Sbjct: 72 PSSKSVEFGRHLNMRHDFSELLEQPLTTSKTRVFKSFNEKLKGKPQLVKSDKGVLPLNKQ 131
Query: 402 DLLIPS---ALSNNYEGSGDLKRHKSDTIVLDKHIVD----VFYKKMG-SEFTIKDYRDD 557
++ S LSN S K+ + D I DK +++ F K G ++F + +
Sbjct: 132 SDILNSYERVLSNASVDSALDKKAEVDIIPFDKSVMEPKNITFNDKSGLTKFGNSNSYET 191
Query: 558 STKEISDYKLCYDKSK-NKISENINETT 638
+ + S+Y D S+ N +++ + T
Sbjct: 192 TYSDSSNYHTSTDSSQYNDQDDHVYDDT 219
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 495 IVDVFYKKMGSEFTIKDYRDDSTKEISDYKLCYDKSKN 608
IVD YK +GS + + D K ++ DK+K+
Sbjct: 124 IVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKD 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,343
Number of Sequences: 5004
Number of extensions: 47406
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -