Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29i02
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   0.57 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   0.75 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   4.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   5.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   9.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    20   9.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   9.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    20   9.3  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    20   9.3  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 24.2 bits (50), Expect = 0.57
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +3

Query: 69  CSTTHQIIIQTRQDLIDKNRRSSEGIFGIKSMRKG*HRQHTSASDDPNGDQLIYPLSNMF 248
           C   HQ + +   +++ +N R+ + I G+K   +     H   S+ P  D+ +  LSN  
Sbjct: 327 CWNEHQSLQRQNLEMVAQNDRTLQMIAGMKIKEE---LPHFVGSNKPVKDEYMLVLSNRM 383

Query: 249 E 251
           +
Sbjct: 384 Q 384


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 206 PKWRPADIPTKQYVRVQVKNENPHMRIHNVLEW-TVLLSDGKPSV 337
           PKW+     T   V    K ++P +R +   EW TV   DG  SV
Sbjct: 204 PKWKDGIPVTLTTVPKHSKTKSPKLRPYPNWEWHTVGNCDGLTSV 248


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 144 FLLMIFGSCRSDLAEF 97
           FLLM FG C + L EF
Sbjct: 310 FLLMSFGYCIATLLEF 325


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 314 LSDGKPSVCD 343
           L DGKP +CD
Sbjct: 492 LCDGKPGLCD 501


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 227 IPTKQYVRVQVKNENPHMRIHNVLEWTVLLSDG 325
           + T+Q+V+ Q +  N H +    + WT   + G
Sbjct: 276 VNTEQFVKSQYQANNVHYQGKENILWTQASAKG 308



 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/34 (20%), Positives = 20/34 (58%)
 Frame = +3

Query: 69  CSTTHQIIIQTRQDLIDKNRRSSEGIFGIKSMRK 170
           C   ++++ +   +++ KN+ + + I G+K  R+
Sbjct: 327 CWNENRLLDRRNIEVVAKNKETLQAITGLKVKRR 360


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 274 RILIFNLYSNILLSGYISWSPF 209
           R  I  + S ++++ +I W+PF
Sbjct: 255 RKTITRMLSAVVITFFICWAPF 276


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 234 LSNMFEYKLKMRIRTCESTTCWSGPY 311
           L+++  Y +K +  TC     W G Y
Sbjct: 231 LTSLNAYLIKNQTITCPIKVSWRGNY 256


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 234 LSNMFEYKLKMRIRTCESTTCWSGPY 311
           L+++  Y +K +  TC     W G Y
Sbjct: 282 LTSLNAYLIKNQTITCPIKVSWRGNY 307


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 234 LSNMFEYKLKMRIRTCESTTCWSGPY 311
           L+++  Y +K +  TC     W G Y
Sbjct: 231 LTSLNAYLIKNQTITCPIKVSWRGNY 256


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 178 CYPFLILLIPNIPS 137
           C P  + ++PN PS
Sbjct: 224 CIPLPVRVLPNFPS 237


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 193 EVCCRCYPFLILLIPNIPSDD 131
           EV C  Y +L L+   IPS++
Sbjct: 316 EVLCPLYKYLQLIENVIPSNE 336


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 38  TVVAPLCAYDMLYHPPD 88
           T   P+C YD  + P D
Sbjct: 153 TTYTPVCEYDHTWWPYD 169


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 193 EVCCRCYPFLILLIPNIPSDD 131
           EV C  Y +L L+   IPS++
Sbjct: 331 EVLCPLYKYLQLIENVIPSNE 351


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 162 YS*FQIFLLMIFGS 121
           YS  Q+F+L IFG+
Sbjct: 165 YSLGQVFMLCIFGN 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,799
Number of Sequences: 438
Number of extensions: 2891
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)